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Results for CNB 386639

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

386639_ENSG00000158066_HUMAN_940_989/1-50        CAAGGTGCAACTTCCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386639_ENSDARG00000006691_ZEBRAFISH_909_956/1-50 -AAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACC-
386639_ENSMUSG00000051666_MOUSE_9549_9598/1-50   AACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386639_SINFRUG00000134705_FUGU_6366_6413/1-50    -AAGGTGCAACAGTAATCGGTCGTCCCGACTGCGGGTTCATCCGACACC-
                                                  * ********     ************* * ***************** 


//

386639.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 50
 Mean pairwise identity:  87.58
 Mean single sequence MFE: -15.13
 Consensus MFE: -15.12
 Energy contribution: -15.13
 Covariance contribution:   0.00
 Mean z-score:  -1.68
 Structure conservation index:   1.00
 SVM decision value:   1.37
 SVM RNA-class probability: 0.949649
 Prediction: RNA

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>386639_ENSG00000158066_HUMAN_940_989/1-50
CAAGGUGCAACUUCCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
...((((.........((((..(.((((....))))..)..)))))))). ( -16.00)
>386639_ENSDARG00000006691_ZEBRAFISH_909_956/1-50
AAGGUGCAACAGUUUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC
..((((.........((((..(.((((....))))..)..)))))))) ( -14.30)
>386639_ENSMUSG00000051666_MOUSE_9549_9598/1-50
AACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
...((((.........((((..(.((((....))))..)..)))))))). ( -16.10)
>386639_SINFRUG00000134705_FUGU_6366_6413/1-50
AAGGUGCAACAGUAAUCGGUCGUCCCGACUGCGGGUUCAUCCGACACC
..((((.........((((..(.((((....))))..)..)))))))) ( -14.10)
>consensus
_AAGGUGCAACAGUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC_
...((((.........((((..(.((((....))))..)..)))))))). (-15.12 = -15.13 +   0.00) 

386639.rnaz

RNAalifold consensus structure

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