Index

Locus ID	Seq. ID	Location	Custom annotation	Window ID	Location	Strand	N	Length	Mean pairwise ID	z	SCI	P
1	sy_aureus.rRNA	575,860 – 576,072	–	1	575,860 – 575,970	+	4	120	63.06	-3.26	0.44	0.996651
				2	575,899 – 576,009	+	4	120	62.41	-2.80	0.46	0.995280
				3	575,970 – 576,072	+	4	120	72.74	-2.16	0.56	0.970205
2	sy_aureus.rRNA	576,302 – 576,651	–	4	576,302 – 576,411	+	4	120	62.05	-1.69	0.51	0.934105
				5	576,411 – 576,512	+	4	120	67.96	-2.29	0.57	0.998055
				6	576,512 – 576,617	+	4	120	69.92	-1.97	0.54	0.951668
				7	576,548 – 576,651	+	4	120	72.39	-3.46	0.51	0.999747
3	sy_aureus.rRNA	576,942 – 577,085	–	8	576,942 – 577,050	+	4	120	63.88	-1.84	0.50	0.942494
3	sy_aureus.rRNA	576,942 – 577,085	–	9	576,978 – 577,085	+	4	120	68.09	-2.69	0.37	0.856572
4	sy_aureus.rRNA	579,928 – 580,286	–	10	579,928 – 580,048	+	4	120	81.40	-2.66	0.73	0.991768
				11	579,928 – 580,048	-	4	120	81.40	-1.66	0.66	0.575121
				12	579,968 – 580,088	+	4	120	80.26	-3.19	0.83	0.999347
				13	580,048 – 580,168	+	4	120	82.15	-2.38	0.81	0.980406
				14	580,048 – 580,168	-	4	120	82.15	-2.44	0.81	0.984223
				15	580,088 – 580,208	+	4	120	72.96	-2.66	0.82	0.999811
				16	580,088 – 580,208	-	4	120	72.96	-2.16	0.82	0.998401
				17	580,128 – 580,246	+	4	120	66.67	-1.89	0.74	0.997466
				18	580,128 – 580,246	-	4	120	66.67	-1.26	0.69	0.897184
				19	580,168 – 580,286	+	4	120	67.67	-1.37	0.63	0.843955
5	sy_aureus.rRNA	580,446 – 580,685	–	20	580,446 – 580,565	+	4	120	85.28	-1.60	1.10	0.990283
5	sy_aureus.rRNA	580,446 – 580,685	–	21	580,565 – 580,685	+	4	120	88.61	-3.03	1.09	0.999573
6	sy_aureus.rRNA	580,725 – 581,280	–	22	580,725 – 580,843	+	4	120	81.87	-0.91	0.97	0.637198
				23	580,763 – 580,883	-	4	120	85.97	-1.48	0.84	0.601832
				24	580,843 – 580,963	-	4	120	94.72	-1.73	0.82	0.550467
				25	580,923 – 581,041	+	4	120	95.28	-1.70	0.95	0.836754
				26	580,923 – 581,041	-	4	120	95.28	-1.53	0.94	0.692302
				27	580,963 – 581,080	+	4	120	87.99	-1.41	0.80	0.544547
				28	581,041 – 581,160	+	4	120	81.01	-3.58	0.84	0.999568
				29	581,080 – 581,200	+	4	120	87.08	-2.22	0.94	0.985687
				30	581,120 – 581,240	-	4	120	93.75	-1.68	0.96	0.885337
				31	581,160 – 581,280	+	4	120	92.22	-1.80	1.01	0.962711
				32	581,160 – 581,280	-	4	120	92.22	-1.94	0.96	0.965075
7	sy_aureus.rRNA	581,320 – 581,439	–	33	581,320 – 581,439	+	4	120	72.66	-2.19	0.86	0.999003
8	sy_aureus.rRNA	581,516 – 581,634	–	34	581,516 – 581,634	+	4	120	84.58	-2.12	0.78	0.920795
9	sy_aureus.rRNA	581,674 – 581,792	–	35	581,674 – 581,792	+	4	120	92.86	-2.10	0.88	0.936901
10	sy_aureus.rRNA	581,992 – 582,311	–	36	581,992 – 582,111	+	4	120	76.71	-0.82	1.01	0.986272
				37	581,992 – 582,111	-	4	120	76.71	-0.97	0.95	0.933989
				38	582,071 – 582,191	+	4	120	88.33	-1.91	1.02	0.983546
				39	582,071 – 582,191	-	4	120	88.33	-1.71	0.98	0.940348
				40	582,111 – 582,231	+	4	120	95.69	-2.18	0.99	0.973665
				41	582,111 – 582,231	-	4	120	95.69	-2.11	0.96	0.955501
				42	582,151 – 582,271	+	4	120	93.89	-3.07	0.99	0.997744
				43	582,191 – 582,311	+	4	120	94.58	-2.53	0.97	0.991339
11	sy_aureus.rRNA	582,351 – 582,511	–	44	582,351 – 582,471	+	4	120	99.17	-2.23	1.00	0.868291
11	sy_aureus.rRNA	582,351 – 582,511	–	45	582,391 – 582,511	+	4	120	98.75	-1.75	0.95	0.561142
12	sy_aureus.rRNA	582,551 – 582,763	–	46	582,551 – 582,668	+	4	120	88.47	-1.32	0.98	0.743276
				47	582,631 – 582,747	-	4	120	80.42	-1.66	0.64	0.541337
				48	582,647 – 582,763	+	4	120	81.25	-1.46	0.84	0.629534
				49	582,647 – 582,763	-	4	120	81.25	-1.53	0.85	0.704954
13	sy_aureus.rRNA	582,843 – 582,924	–	50	582,843 – 582,924	-	4	81	73.85	-0.32	0.97	0.980181
14	sy_aureus.tRNA	574,434 – 574,493	–	51	574,434 – 574,493	-	3	59	98.87	-1.52	1.00	0.678331
15	sy_aureus.tRNA	832,755 – 832,821	–	52	832,755 – 832,821	-	5	66	93.64	-1.74	0.87	0.970972
16	sy_aureus.tRNA	832,927 – 832,995	–	53	832,927 – 832,995	+	6	68	91.08	-1.53	1.02	0.997459
16	sy_aureus.tRNA	832,927 – 832,995	–	54	832,927 – 832,995	-	6	68	91.08	-1.95	0.88	0.940904
17	sy_aureus.tRNA	834,852 – 834,919	–	55	834,852 – 834,919	+	6	67	86.97	-1.73	1.00	0.986090
18	sy_haemo.tRNA	1,108,256 – 1,108,313	–	56	1,108,256 – 1,108,313	-	4	57	96.78	-1.56	1.01	0.698870
19	sy_haemo.tRNA	1,109,077 – 1,109,135	–	57	1,109,077 – 1,109,135	-	5	58	97.93	-1.31	1.02	0.891979
20	sy_haemo.tRNA	1,109,179 – 1,109,236	–	58	1,109,179 – 1,109,236	-	5	57	90.53	-1.65	0.93	0.975376
21	sy_haemo.tRNA	1,110,081 – 1,110,137	–	59	1,110,081 – 1,110,137	-	4	56	88.99	-2.00	0.94	0.969528
22	sy_haemo.tRNA	1,140,761 – 1,140,818	–	60	1,140,761 – 1,140,818	-	5	57	96.84	-1.57	0.88	0.867716
23	sy_haemo.tRNA	1,141,098 – 1,141,154	–	61	1,141,098 – 1,141,154	+	4	56	97.32	-1.67	0.99	0.731181
23	sy_haemo.tRNA	1,141,098 – 1,141,154	–	62	1,141,098 – 1,141,154	-	4	56	97.32	-1.79	1.00	0.823278
24	sy_aureus.rRNA	572,453 – 572,536	–	63	572,453 – 572,536	-	2	83	68.67	-0.20	1.00	0.997810
25	sy_sapro.tRNA	748,852 – 748,911	–	64	748,852 – 748,911	-	2	59	93.22	-1.62	1.01	0.945042
26	sy_sapro.tRNA	841,505 – 841,560	–	65	841,505 – 841,560	-	5	55	89.09	-1.18	1.11	0.889306
27	sy_sapro.tRNA	964,946 – 965,005	–	66	964,946 – 965,005	-	3	61	86.19	-1.26	0.92	0.665872
28	sy_sapro.tRNA	1,004,151 – 1,004,208	–	67	1,004,151 – 1,004,208	-	2	58	82.76	-2.72	0.99	0.999432
29	sy_aureus.rRNA	534,063 – 534,144	–	68	534,063 – 534,144	-	2	81	72.84	-0.71	0.94	0.952738
30	sp_mutans.tRNA	1,678,260 – 1,678,315	–	69	1,678,260 – 1,678,315	+	2	55	94.55	-1.37	0.99	0.702775
30	sp_mutans.tRNA	1,678,260 – 1,678,315	–	70	1,678,260 – 1,678,315	-	2	55	94.55	-3.51	1.00	0.999619
31	sy_sapro.rRNA	745,637 – 745,797	–	71	745,637 – 745,757	+	2	120	90.83	-2.04	0.97	0.983815
31	sy_sapro.rRNA	745,637 – 745,797	–	72	745,677 – 745,797	+	2	120	91.67	-2.12	1.05	0.998663
32	sy_sapro.rRNA	745,837 – 745,997	–	73	745,837 – 745,957	+	2	120	89.17	-1.89	1.02	0.994699
				74	745,837 – 745,957	-	2	120	89.17	-0.91	1.00	0.528884
				75	745,877 – 745,997	+	2	120	90.00	-2.08	0.94	0.977983
				76	745,877 – 745,997	-	2	120	90.00	-1.01	1.00	0.607573
33	sy_sapro.rRNA	746,077 – 746,197	–	77	746,077 – 746,197	+	2	120	98.33	-1.58	0.97	0.679100
34	sy_sapro.rRNA	746,277 – 746,397	–	78	746,277 – 746,397	+	2	120	96.67	-3.65	1.02	0.999534
35	sy_sapro.rRNA	746,477 – 746,637	–	79	746,477 – 746,597	+	2	120	95.83	-1.47	0.98	0.704480
				80	746,517 – 746,637	+	2	120	97.50	-2.01	0.99	0.952773
				81	746,517 – 746,637	-	2	120	97.50	-1.50	0.96	0.549371
36	sy_sapro.rRNA	746,757 – 747,197	–	82	746,757 – 746,877	+	2	120	99.17	-3.75	1.00	0.998429
				83	746,757 – 746,877	-	2	120	99.17	-1.40	1.04	0.882377
				84	746,837 – 746,957	-	2	120	100.00	-2.13	1.00	0.967627
				85	746,917 – 747,037	+	2	120	94.17	-1.79	0.92	0.723633
				86	747,037 – 747,157	+	2	120	99.17	-2.47	1.01	0.991864
				87	747,037 – 747,157	-	2	120	99.17	-1.79	1.01	0.934903
				88	747,077 – 747,197	-	2	120	94.17	-2.25	1.01	0.994957
37	sy_sapro.rRNA	747,277 – 747,517	–	89	747,277 – 747,397	+	2	120	96.67	-2.01	0.91	0.717562
37	sy_sapro.rRNA	747,277 – 747,517	–	90	747,397 – 747,517	+	2	120	100.00	-1.53	1.00	0.792275
38	sy_sapro.rRNA	747,677 – 747,997	–	91	747,677 – 747,797	+	2	120	94.17	-2.91	0.96	0.997931
				92	747,717 – 747,837	+	2	120	93.33	-1.78	0.96	0.879567
				93	747,717 – 747,837	-	2	120	93.33	-1.53	0.97	0.766133
				94	747,757 – 747,877	+	2	120	93.33	-1.76	1.01	0.968270
				95	747,757 – 747,877	-	2	120	93.33	-2.01	0.98	0.971625
				96	747,837 – 747,957	+	2	120	95.83	-3.31	1.01	0.999388
				97	747,837 – 747,957	-	2	120	95.83	-2.15	1.01	0.987573
				98	747,877 – 747,997	+	2	120	97.50	-1.55	1.00	0.834651
39	sy_sapro.rRNA	748,037 – 748,317	–	99	748,037 – 748,157	+	2	120	100.00	-2.55	1.00	0.990607
				100	748,077 – 748,197	+	2	120	100.00	-2.88	0.95	0.977151
				101	748,197 – 748,317	+	2	120	99.17	-1.55	0.95	0.505808
				102	748,197 – 748,317	-	2	120	99.17	-1.62	1.00	0.849101
40	sy_sapro.rRNA	2,304,660 – 2,304,780	–	103	2,304,660 – 2,304,780	-	3	120	98.33	-3.00	0.99	0.988543
41	sy_sapro.rRNA	2,304,980 – 2,305,620	–	104	2,304,980 – 2,305,100	+	3	120	99.44	-1.39	1.00	0.579190
				105	2,305,020 – 2,305,140	-	3	120	99.44	-1.48	1.01	0.655514
				106	2,305,140 – 2,305,260	-	3	120	99.44	-1.44	1.00	0.614695
				107	2,305,220 – 2,305,340	-	3	120	100.00	-1.62	1.00	0.746171
				108	2,305,260 – 2,305,380	-	3	120	100.00	-3.16	1.00	0.989071
				109	2,305,300 – 2,305,420	+	3	120	100.00	-1.77	1.00	0.824766
				110	2,305,300 – 2,305,420	-	3	120	100.00	-2.15	1.00	0.934425
				111	2,305,420 – 2,305,540	-	3	120	100.00	-2.17	1.00	0.937742
				112	2,305,460 – 2,305,580	-	3	120	99.44	-2.02	0.99	0.903938
				113	2,305,500 – 2,305,620	+	3	120	98.89	-1.85	1.02	0.888070
42	sy_sapro.rRNA	2,305,740 – 2,306,140	–	114	2,305,740 – 2,305,860	-	3	120	97.22	-1.30	1.02	0.545607
				115	2,305,860 – 2,305,980	+	3	120	96.11	-2.40	0.98	0.969532
				116	2,305,940 – 2,306,060	+	3	120	93.33	-2.01	0.93	0.849511
				117	2,305,940 – 2,306,060	-	3	120	93.33	-2.50	0.97	0.981769
				118	2,305,980 – 2,306,100	+	3	120	95.00	-1.50	0.95	0.521849
				119	2,305,980 – 2,306,100	-	3	120	95.00	-2.98	1.00	0.994136
				120	2,306,020 – 2,306,140	-	3	120	94.17	-1.69	0.92	0.607092
43	sy_sapro.rRNA	2,350,617 – 2,350,777	–	121	2,350,617 – 2,350,737	-	3	120	100.00	-2.58	1.00	0.975393
43	sy_sapro.rRNA	2,350,617 – 2,350,777	–	122	2,350,657 – 2,350,777	-	3	120	100.00	-1.83	1.00	0.847189
44	sy_sapro.rRNA	2,350,857 – 2,351,137	–	123	2,350,857 – 2,350,977	+	3	120	97.22	-1.88	1.02	0.915513
				124	2,350,857 – 2,350,977	-	3	120	97.22	-3.04	1.01	0.993672
				125	2,350,937 – 2,351,057	+	3	120	95.56	-2.13	0.97	0.932215
				126	2,350,937 – 2,351,057	-	3	120	95.56	-1.92	1.01	0.929149
				127	2,350,977 – 2,351,097	+	3	120	94.44	-1.48	0.96	0.587640
				128	2,350,977 – 2,351,097	-	3	120	94.44	-1.69	0.98	0.799581
				129	2,351,017 – 2,351,137	-	3	120	96.11	-2.64	0.93	0.954387
45	sy_sapro.rRNA	2,351,417 – 2,351,577	–	130	2,351,417 – 2,351,537	-	3	120	97.78	-1.47	1.00	0.643909
45	sy_sapro.rRNA	2,351,417 – 2,351,577	–	131	2,351,457 – 2,351,577	-	3	120	97.78	-1.36	1.00	0.552209
46	sy_sapro.rRNA	2,351,617 – 2,352,056	–	132	2,351,617 – 2,351,736	+	3	120	89.42	-2.24	0.93	0.943568
				133	2,351,657 – 2,351,776	+	3	120	91.64	-1.96	1.03	0.981416
				134	2,351,657 – 2,351,776	-	3	120	91.64	-2.33	1.07	0.997464
				135	2,351,776 – 2,351,896	-	3	120	96.11	-1.61	0.94	0.568756
				136	2,351,856 – 2,351,976	+	3	120	100.00	-3.09	1.00	0.988451
				137	2,351,896 – 2,352,016	-	3	120	99.44	-1.38	1.00	0.568939
				138	2,351,936 – 2,352,056	+	3	120	97.77	-1.51	1.05	0.799716
				139	2,351,936 – 2,352,056	-	3	120	97.77	-3.60	1.04	0.996718
47	sy_sapro.rRNA	2,352,176 – 2,352,536	–	140	2,352,176 – 2,352,296	-	3	120	98.33	-2.52	1.01	0.981278
				141	2,352,296 – 2,352,416	-	3	120	98.33	-1.48	0.96	0.517695
				142	2,352,416 – 2,352,536	-	3	120	96.67	-3.44	1.03	0.997133
48	sy_sapro.rRNA	2,352,816 – 2,352,976	–	143	2,352,816 – 2,352,936	+	3	120	90.56	-1.40	0.98	0.753977
				144	2,352,816 – 2,352,936	-	3	120	90.56	-2.44	0.99	0.989807
				145	2,352,856 – 2,352,976	+	3	120	91.11	-1.42	1.06	0.952463
				146	2,352,856 – 2,352,976	-	3	120	91.11	-2.06	1.10	0.997910
49	sy_sapro.rRNA	2,353,016 – 2,353,176	–	147	2,353,016 – 2,353,136	-	3	120	92.78	-2.83	1.00	0.994609
49	sy_sapro.rRNA	2,353,016 – 2,353,176	–	148	2,353,056 – 2,353,176	-	3	120	92.78	-2.34	0.97	0.971317
50	sy_sapro.tRNA	204,411 – 204,465	–	149	204,411 – 204,465	+	3	54	95.06	-2.38	0.95	0.949609
51	sy_sapro.tRNA	690,503 – 690,560	–	150	690,503 – 690,560	-	3	57	98.83	-1.86	1.00	0.865191
52	sy_sapro.tRNA	966,185 – 966,242	–	151	966,185 – 966,242	-	3	57	98.83	-1.93	0.97	0.833249
53	sy_sapro.misc_RNA	543,974 – 544,274	–	152	543,974 – 544,093	+	3	120	88.06	-2.08	0.89	0.864085
				153	544,013 – 544,133	+	3	120	92.76	-3.24	0.88	0.963951
				154	544,013 – 544,133	-	3	120	92.76	-2.07	0.93	0.885909
				155	544,053 – 544,172	+	3	120	91.09	-2.30	0.88	0.867685
				156	544,133 – 544,252	+	3	120	79.44	-1.09	0.84	0.579055
				157	544,133 – 544,252	-	3	120	79.44	-1.51	0.75	0.677879
				158	544,154 – 544,274	+	3	120	80.56	-1.90	0.81	0.917746

Generated by rnazIndex.pl (part of RNAz 1.0pre) on Fri Apr 7 15:54:01 2006