| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,109,179 – 1,109,236 |
| Length | 57 |
| Max. P | 0.975376 |
| Location | 1,109,179 – 1,109,236 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 90.53 |
| Mean single sequence MFE | -17.26 |
| Consensus MFE | -16.02 |
| Energy contribution | -14.90 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1109179 57 - 2685023 AGGACUCGAACCUGCGACCGAACGGUUAUGAGCCGUUAGCUCUAACCAACUGAGCUA .((.((((((((..(....)...)))).))))))..((((((.........)))))) ( -16.40) >sy_sapro.tRNA 965692 57 - 2516583 AGGACUCGAACCUGCGACCGAACGGUUAUGAGCCGUUAGCUCUAACCAACUGAGCUA .((.((((((((..(....)...)))).))))))..((((((.........)))))) ( -16.40) >sp_agal.tRNA 28041 57 - 2160275 AGGACUCGAACCUACGACCGCUCGGUUAUGAGCCGAGUGCUCUAACCAGUUGAGCUA .((.(((((......((.((((((((.....)))))))).)).......))))))). ( -19.42) >sp_mutans.tRNA 22965 57 - 2030929 AGGACUCGAACCUACGACCGCUCGGUUAUGAGCCGAGUGCUCUAACCAGCUGAGCUA .((..(((......)))))(((((((.....)))))))((((.........)))).. ( -17.80) >sp_pneumo.tRNA 347213 57 - 2038623 AGGACUUGAACCUACGACCACUCGGUUAUGAGCCGAGAGCUCUAACCAGCUGAGCUA (((.......))).......((((((.....))))))(((((.........))))). ( -16.30) >consensus AGGACUCGAACCUACGACCGCUCGGUUAUGAGCCGAGAGCUCUAACCAGCUGAGCUA .((..(((......))))).((((((.....)))))).((((.........)))).. (-16.02 = -14.90 + -1.12) # Strand winner: forward (0.91)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:16 2006