Locus 32

Sequence ID sy_sapro.rRNA
Location 745,837 – 745,997
Length 160
Max. P 0.994699
window73 window74 window75 window76

overview

Window 3

Location 745,837 – 745,957
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 89.17
Mean single sequence MFE -29.50
Consensus MFE -30.15
Energy contribution -29.65
Covariance contribution -0.50
Combinations/Pair 1.16
Mean z-score -1.89
Structure conservation index 1.02
SVM decision value 2.50
SVM RNA-class probability 0.994699
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745837 120 + 2516583
CGAGCUUGCUUGUUGGGGUUGUAGGACACUCUAUACGGAGUUACAAAAGAACAGACUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAGUUUGUUCA
((((....))))......(((((....(((((....))))))))))..(((((((((.(((((.((((((....)))))).)).....(((.......)))...)))...))))))))). ( -35.00)
>sy_haemo.rRNA 882008 120 + 2685023
UAAGCUUGCUUAUUGGGGUUGUAGGACACUCUAUACGGAGUUACAAAGGAAUAUAUUAGACGAAUCAUCUGGAAAGUUGAAUCAAAGAAGGUAAUAAUCCUGUAGUUGAAAAUAUAUUCU
((((....))))......(((((....(((((....)))))))))).((((((((((.(((((.(((.((....)).))).)).....(((.......)))...)))...)))))))))) ( -24.00)
>consensus
CAAGCUUGCUUAUUGGGGUUGUAGGACACUCUAUACGGAGUUACAAAAGAACAGACUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUAUAUUCA
((((....))))......(((((....(((((....))))))))))..(((((((((.(((((.((((((....)))))).)).....(((.......)))...)))...))))))))). (-30.15 = -29.65 +  -0.50)

alignment

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secondary structure

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dotplot

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Window 4

Location 745,837 – 745,957
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -19.50
Consensus MFE -19.55
Energy contribution -20.05
Covariance contribution 0.50
Combinations/Pair 1.08
Mean z-score -0.91
Structure conservation index 1.00
SVM decision value -0.01
SVM RNA-class probability 0.528884
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745837 120 - 2516583
UGAACAAACUUUCGACUACAGGAUUAUUACCUUCUUUGAUUCAUCUUUCCAGAUGAUUCGUCUAGUCUGUUCUUUUGUAACUCCGUAUAGAGUGUCCUACAACCCCAACAAGCAAGCUCG
.(((((.(((...(((...(((.......))).....((.((((((....)))))).))))).))).)))))..(((((((((......))))....))))).................. ( -22.60)
>sy_haemo.rRNA 882008 120 - 2685023
AGAAUAUAUUUUCAACUACAGGAUUAUUACCUUCUUUGAUUCAACUUUCCAGAUGAUUCGUCUAAUAUAUUCCUUUGUAACUCCGUAUAGAGUGUCCUACAACCCCAAUAAGCAAGCUUA
.(((((((((..........((((((..........))))))........(((((...))))))))))))))..(((((((((......))))....)))))......((((....)))) ( -16.40)
>consensus
AGAACAAACUUUCAACUACAGGAUUAUUACCUUCUUUGAUUCAACUUUCCAGAUGAUUCGUCUAAUAUAUUCCUUUGUAACUCCGUAUAGAGUGUCCUACAACCCCAACAAGCAAGCUCA
.(((((((((...(((...(((.......))).....((.((((((....)))))).))))).)))))))))..(((((((((......))))....)))))......((((....)))) (-19.55 = -20.05 +   0.50) 
# Strand winner: forward (1.00)

alignment

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secondary structure

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dotplot

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Window 5

Location 745,877 – 745,997
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -28.65
Consensus MFE -27.00
Energy contribution -27.75
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.94
SVM decision value 1.80
SVM RNA-class probability 0.977983
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745877 120 + 2516583
UUACAAAAGAACAGACUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAGUUUGUUCACUCUUGAGUGGAUCCUGAGUACGACGGAACACGAGAAAUU
........(((((((((.(((((.((((((....)))))).)).....(((.......)))...)))...)))))))))..((((..(((..(((..........))).))))))).... ( -32.90)
>sy_haemo.rRNA 882048 120 + 2685023
UUACAAAGGAAUAUAUUAGACGAAUCAUCUGGAAAGUUGAAUCAAAGAAGGUAAUAAUCCUGUAGUUGAAAAUAUAUUCUCUCUUGAGUGGAUCCUGAGUACGACGGAGCACGUGAAAUU
((((...((((((((((.(((((.(((.((....)).))).)).....(((.......)))...)))...)))))))))).......(((..(((..........))).))))))).... ( -24.40)
>consensus
UUACAAAAGAACAGACUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUAUAUUCACUCUUGAGUGGAUCCUGAGUACGACGGAACACGAGAAAUU
((((....(((((((((.(((((.((((((....)))))).)).....(((.......)))...)))...)))))))))........(((..(((..........))).))))))).... (-27.00 = -27.75 +   0.75)

alignment

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secondary structure

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dotplot

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Window 6

Location 745,877 – 745,997
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -21.30
Consensus MFE -21.40
Energy contribution -21.65
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.01
Structure conservation index 1.00
SVM decision value 0.15
SVM RNA-class probability 0.607573
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745877 120 - 2516583
AAUUUCUCGUGUUCCGUCGUACUCAGGAUCCACUCAAGAGUGAACAAACUUUCGACUACAGGAUUAUUACCUUCUUUGAUUCAUCUUUCCAGAUGAUUCGUCUAGUCUGUUCUUUUGUAA
........(((.(((..........)))..))).(((((..(((((.(((...(((...(((.......))).....((.((((((....)))))).))))).))).))))))))))... ( -24.00)
>sy_haemo.rRNA 882048 120 - 2685023
AAUUUCACGUGCUCCGUCGUACUCAGGAUCCACUCAAGAGAGAAUAUAUUUUCAACUACAGGAUUAUUACCUUCUUUGAUUCAACUUUCCAGAUGAUUCGUCUAAUAUAUUCCUUUGUAA
........(((.(((..........)))..)))...((((.(((((((((..........((((((..........))))))........(((((...)))))))))))))))))).... ( -18.60)
>consensus
AAUUUCACGUGCUCCGUCGUACUCAGGAUCCACUCAAGAGAGAACAAACUUUCAACUACAGGAUUAUUACCUUCUUUGAUUCAACUUUCCAGAUGAUUCGUCUAAUAUAUUCCUUUGUAA
........(((.(((..........)))..)))...((((.(((((((((...(((...(((.......))).....((.((((((....)))))).))))).))))))))))))).... (-21.40 = -21.65 +   0.25) 
# Strand winner: forward (0.99)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:30 2006