Locus 37

Sequence ID sy_sapro.rRNA
Location 747,277 – 747,517
Length 240
Max. P 0.792275
window89 window90

overview

Window 9

Location 747,277 – 747,397
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -39.35
Consensus MFE -35.80
Energy contribution -37.55
Covariance contribution 1.75
Combinations/Pair 1.03
Mean z-score -2.01
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.717562
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 747277 120 + 2516583
AAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGGAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGG
......(((((....(....).....)))))((((((..((((....))))..)))))).((((.((....((....))..((((...........)))).)).))))....((....)) ( -39.00)
>sy_haemo.rRNA 883447 120 + 2685023
AAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUGCAAGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGG
......(((((....(....).....)))))(((((((.((((....)))).))))))).((((.((....((....))..((((...........)))).)).))))....((....)) ( -39.70)
>consensus
AAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUGAAAGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGG
......(((((.....(((....))))))))(((((((.((((....)))).))))))).((((.((....((....))..((((...........)))).)).))))....((....)) (-35.80 = -37.55 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 747,397 – 747,517
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -42.90
Consensus MFE -42.90
Energy contribution -42.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 1.00
SVM decision value 0.59
SVM RNA-class probability 0.792275
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 747397 120 + 2516583
UGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAGCUUCUGCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUA
.........((((((((((.(((((...((((((..((((..((...((((((.((....))..))))))...))..))))))))))...))))).)))........)))))))...... ( -42.90)
>sy_haemo.rRNA 883567 120 + 2685023
UGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAGCUUCUGCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUA
.........((((((((((.(((((...((((((..((((..((...((((((.((....))..))))))...))..))))))))))...))))).)))........)))))))...... ( -42.90)
>consensus
UGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAGCUUCUGCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUA
.........((((((((((.(((((...((((((..((((..((...((((((.((....))..))))))...))..))))))))))...))))).)))........)))))))...... (-42.90 = -42.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:42 2006