Locus 33

Sequence ID sy_sapro.rRNA
Location 746,077 – 746,197
Length 120
Max. P 0.679100
window77

overview

Window 7

Location 746,077 – 746,197
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -36.75
Consensus MFE -35.80
Energy contribution -35.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.97
SVM decision value 0.30
SVM RNA-class probability 0.679100
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746077 120 + 2516583
GUGAAAAGUACCCCGGAAGGGGAGUGAAAUAGAACUUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUU
..........((((....))))....((((..((((((...(((.((..(((((((((((((..(((((....)))))..)))).)))...)))))).....)))))))))))...)))) ( -36.50)
>sy_haemo.rRNA 882248 120 + 2685023
GUGAAAAGUACCCCGGAAGGGGAGUGAAAGAGAACUUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCU
..........((((....))))......(((.((((((...(((.((..(((((((((((((..(((((....)))))..)))).)))...)))))).....)))))))))))....))) ( -37.00)
>consensus
GUGAAAAGUACCCCGGAAGGGGAGUGAAAGAGAACUUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCU
..........((((....))))..........((((((...(((.((..(((((((((((((..(((((....)))))..)))).)))...)))))).....)))))))))))....... (-35.80 = -35.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:31 2006