Locus 15

Sequence ID sy_aureus.tRNA
Location 832,755 – 832,821
Length 66
Max. P 0.970972
window52

overview

Window 2

Location 832,755 – 832,821
Length 66
Sequences 5
Columns 66
Reading direction reverse
Mean pairwise identity 93.64
Mean single sequence MFE -21.14
Consensus MFE -18.44
Energy contribution -17.72
Covariance contribution -0.72
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 1.67
SVM RNA-class probability 0.970972
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.tRNA 832755 66 - 2809430
AGGGAGUCGAACCCCCACGCCGUAAGGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCA
.((.((.((.........(((....)))(((((((.....))))))).)).)).)).......... ( -22.30)
>sy_haemo.tRNA 1108518 66 - 2685023
AGGGAGUCGAACCCCCACGCCGUAAGGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCA
.((.((.((.........(((....)))(((((((.....))))))).)).)).)).......... ( -22.30)
>sy_sapro.tRNA 965043 66 - 2516583
AGGGAGUCGAACCCCCACGCCGUAAGGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCA
.((.((.((.........(((....)))(((((((.....))))))).)).)).)).......... ( -22.30)
>sp_agal.tRNA 21573 66 - 2160275
AGGGACUUGAACCCCCACGCCGUUAAGCGCCAGAUCCUAAAUCUGGUGCGUCUGCCAAUUCCGCCA
.(((.........)))..((.(....(((((((((.....)))))))))..).))........... ( -19.40)
>sp_pneumo.tRNA 249039 66 - 2038623
AGGGACUUGAACCCCCACGCCGUUAAGCGCCAGAUCCUAAAUCUGGUGCGUCUGCCAAUUCCGCCA
.(((.........)))..((.(....(((((((((.....)))))))))..).))........... ( -19.40)
>consensus
AGGGAGUCGAACCCCCACGCCGUAAGGCGCUAGAUCCUAAGUCUAGUGCGUCUGCCAAUUCCGCCA
.(((.........)))..((.(....(((((((((.....)))))))))..).))........... (-18.44 = -17.72 +  -0.72) 
# Strand winner: forward (0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:11 2006