Locus 17

Sequence ID sy_aureus.tRNA
Location 834,852 – 834,919
Length 67
Max. P 0.986090
window55

overview

Window 5

Location 834,852 – 834,919
Length 67
Sequences 6
Columns 67
Reading direction forward
Mean pairwise identity 86.97
Mean single sequence MFE -27.00
Consensus MFE -26.89
Energy contribution -25.17
Covariance contribution -1.72
Combinations/Pair 1.29
Mean z-score -1.73
Structure conservation index 1.00
SVM decision value 2.03
SVM RNA-class probability 0.986090
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.tRNA 834852 67 + 2809430
UGGCGGAAUUGGCAGACGCGCGGGACUCAAAAUCCCGUUCCACUUGUGGAGUGUCGGUUCGACCCCG
.((.((..(((((.(((((((((((.......))))))((((....))))))))).).)))))))). ( -25.00)
>sy_haemo.tRNA 1110802 67 + 2685023
UGGCGGAAUUGGCAGACGCGCGGGACUCAAAAUCCCGUUCCUGUAUUGGAGUGUCGGUUCGACCCCG
.((.((..(((((.(((((((((((.......))))))(((......)))))))).).)))))))). ( -23.60)
>sy_sapro.tRNA 967927 66 + 2516583
UGGCGGAAUUGGCAGACGCGCGGGACUCAAAAUCCCGUUCCU-UCUUGGAGUGUCGGUUCGAUCCCG
...(((.((((((.(((((((((((.......))))))(((.-....)))))))).).))))).))) ( -24.80)
>sp_agal.tRNA 97336 67 + 2160275
UGGCGGAAUUGGCAGACGCGCUGGACUCAAAAUCCAGUGUCCUCACGGACGUGCCGGUUCGACCCCG
.((..(((((((((.....((((((.......))))))((((....)))).)))))))))..))... ( -27.00)
>sp_mutans.tRNA 191874 67 + 2030929
UGGCGGAAUUGGCAGACGCGCUGGACUCAAAAUCCAGUGUCCGCAAGGACGUGCCGGUUCGACCCCG
.((..(((((((((.....((((((.......))))))((((....)))).)))))))))..))... ( -30.80)
>sp_pneumo.tRNA 187800 67 + 2038623
UGGCGGAAUUGGCAGACGCGCUGGACUCAAAAUCCAGUGUCCGCAAGGACGUGCCGGUUCGACCCCG
.((..(((((((((.....((((((.......))))))((((....)))).)))))))))..))... ( -30.80)
>consensus
UGGCGGAAUUGGCAGACGCGCGGGACUCAAAAUCCAGUGCCCGCAAGGAAGUGCCGGUUCGACCCCG
.((..(((((((((.....((((((.......))))))((((....)))).)))))))))..))... (-26.89 = -25.17 +  -1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:13 2006