Locus 8

Sequence ID sy_aureus.rRNA
Location 581,516 – 581,634
Length 118
Max. P 0.920795
window34

overview

Window 4

Location 581,516 – 581,634
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.58
Mean single sequence MFE -41.09
Consensus MFE -32.20
Energy contribution -32.07
Covariance contribution -0.13
Combinations/Pair 1.14
Mean z-score -2.12
Structure conservation index 0.78
SVM decision value 1.14
SVM RNA-class probability 0.920795
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.rRNA 581516 118 + 2809430
UCAAGAUGAGAAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCU--CUUUAGGGUUAACGCCCAGAAGAGCCGCAGUG
((..(((((((.(((..............))).)))))))...))(((((((......(((((....(....).....)))))..(--((((.((((....)))).))))))))).))). ( -38.54)
>sp_agal.rRNA 19892 107 + 2160275
UCGAGGCGAGUAGCCUCAGGUGAGCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGGCCCCGUAACUUCGGGAGAAGGGGCGCUGAUUUUAGAUC-------------AGCCGCAGUG
..(((((.....))))).....(((((((....))))))).....(((((((......(((((....(....).....)))))..(((((...))))-------------))))).))). ( -42.80)
>sp_mutans.rRNA 20469 107 + 2030929
UCGAGGCGAGUAGCCUCAGGUGAUCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGGCCCCGUAACUUCGGGAGAAGGGGCGCUGGCGAUAAGUC-------------AGCCGCAGUG
..(((((.....))))).(((.....(((((....))))).....)))..((......(((((....(....).....)))))((((((.....)))-------------))).)).... ( -40.40)
>sp_pneumo.rRNA 18602 107 + 2038623
UCGAGGCGAGUAGCCUCAGGUGAGCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUUAAGUC-------------AGCCGCAGUG
..(((((.....))))).....(((((((....))))))).....(((((((......(((((....(....).....)))))..((((.....)))-------------))))).))). ( -42.60)
>consensus
UCGAGGCGAGUAGCCUCAGGUGAGCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGCGCUGACUUUAAGUC_____________AGCCGCAGUG
..(((((.....))))).....((((((......)))))).....(((((((......(((((.....(((....))))))))...(((.....)))..............)))).))). (-32.20 = -32.07 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:50:54 2006