Locus 31

Sequence ID sy_sapro.rRNA
Location 745,637 – 745,797
Length 160
Max. P 0.998663
window71 window72

overview

Window 1

Location 745,637 – 745,757
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -36.95
Consensus MFE -35.85
Energy contribution -35.10
Covariance contribution -0.75
Combinations/Pair 1.09
Mean z-score -2.04
Structure conservation index 0.97
SVM decision value 1.95
SVM RNA-class probability 0.983815
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745637 120 + 2516583
GGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCUGAAGGCAGACGCGGAGAACUGAA
((((((((.......)))))...)))..((.((((((..((((....))))...........(((.(((..(((((((((.........))))))).))..)))))).)))))).))... ( -38.20)
>sy_haemo.rRNA 881808 120 + 2685023
GGGUAGCUGUAAGUAAGCGUUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAGCACGAGUUAUGUUGUGUUAUCGACAAGUGAAUUCAUAGCUUGUCAGAAGGCAGACCCGGAGAACUGAA
((((.(((.......)))....))))..((.((((((...(((....)))(((((((......)))))))...(((((((.........)))))))............)))))).))... ( -35.70)
>consensus
GGGGAGCUGUAAGUAAGCGUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGACAAGUGAAUACAUAGCAUAUCAGAAGGCAGACCCGGAGAACUGAA
((((.(((.......)))....))))..((.((((((..((((....))))...........(((.(((..(((((((((.........))))))).))..)))))).)))))).))... (-35.85 = -35.10 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 745,677 – 745,797
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -33.80
Consensus MFE -35.55
Energy contribution -33.80
Covariance contribution -1.75
Combinations/Pair 1.13
Mean z-score -2.12
Structure conservation index 1.05
SVM decision value 3.18
SVM RNA-class probability 0.998663
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 745677 120 + 2516583
GGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCUGAAGGCAGACGCGGAGAACUGAAACAUCUUAGUACCCGCAGGAAGAGAAAGAAAAAUCGAUUC
(((....)))....(((.....(((.(((..(((((((((.........))))))).))..))))))((((.(.(((((......))))).))))).................))).... ( -35.80)
>sy_haemo.rRNA 881848 120 + 2685023
GGGGGAACCCAGCACGAGUUAUGUUGUGUUAUCGACAAGUGAAUUCAUAGCUUGUCAGAAGGCAGACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAAUCGAUUC
(((....)))....(((.....(((.(((..(((((((((.........))))))).))..))))))((((.(.(((((......))))).))))).................))).... ( -31.80)
>consensus
GGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGACAAGUGAAUACAUAGCAUAUCAGAAGGCAGACCCGGAGAACUGAAACAUCUUAGUACCCGCAGGAAGAGAAAGAAAAAUCGAUUC
(((....)))....(((.....(((.(((..(((((((((.........))))))).))..))))))((((.(.(((((......))))).))))).................))).... (-35.55 = -33.80 +  -1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:27 2006