Locus 34

Sequence ID sy_sapro.rRNA
Location 746,277 – 746,397
Length 120
Max. P 0.999534
window78

overview

Window 8

Location 746,277 – 746,397
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -41.50
Consensus MFE -42.45
Energy contribution -41.45
Covariance contribution -1.00
Combinations/Pair 1.05
Mean z-score -3.65
Structure conservation index 1.02
SVM decision value 3.70
SVM RNA-class probability 0.999534
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746277 120 + 2516583
AAACCAGGUGAUCUACCCAUGACCAGGUUGAAGUUCAGGUAACACUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAGUUGUGGGUAGCGGAGAAAUUCCAAUCGAA
......(((...(((((((..((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))..))))))).((((...)))).)))... ( -41.60)
>sy_haemo.rRNA 882448 120 + 2685023
AAACCAGGUGAUCUACCCAUGGUCAGGUUGAAGUUCAGGUAACACUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGUGGGUAGCGGAGAAAUUCCAAUCGAA
......(((...(((((((((((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))))))))))).((((...)))).)))... ( -41.40)
>consensus
AAACCAGGUGAUCUACCCAUGACCAGGUUGAAGUUCAGGUAACACUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGUGGGUAGCGGAGAAAUUCCAAUCGAA
......(((...(((((((((((((((((...((((((......))))))....))))...(((.(((((........)))))))).)).))))))))))).((((...)))).)))... (-42.45 = -41.45 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:32 2006