| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,141,098 – 1,141,154 |
| Length | 56 |
| Max. P | 0.823278 |
| Location | 1,141,098 – 1,141,154 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 97.32 |
| Mean single sequence MFE | -19.31 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.07 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1141098 56 + 2685023 GUCAAGCGGUUAAGACACCGCCCUUUCACGGCGGUAACACGGGUUCGAGUCCCGUA (((..........)))((((((.......))))))...(((((.......))))). ( -18.70) >sp_agal.tRNA 3226 56 + 2160275 GUCAAGGGGUUAAGACACCGCCUUUUCACGGCGGUAACACGGGUUCGAAUCCCGUA .....((((((..(((((((((.......)))))).......)))..))))))... ( -19.51) >sp_mutans.tRNA 4601 56 + 2030929 GUCAAGGGGUUAAGACACCGCCUUUUCACGGCGGUAACACGGGUUCGAAUCCCGUA .....((((((..(((((((((.......)))))).......)))..))))))... ( -19.51) >sp_pneumo.tRNA 5437 56 + 2038623 GUCAAGGGGUUAAGACACCGCCUUUUCACGGCGGUAACACGGGUUCGAAUCCCGUA .....((((((..(((((((((.......)))))).......)))..))))))... ( -19.51) >consensus GUCAAGGGGUUAAGACACCGCCUUUUCACGGCGGUAACACGGGUUCGAAUCCCGUA (((..........)))((((((.......))))))...(((((.......))))). (-19.08 = -19.07 + -0.00)
| Location | 1,141,098 – 1,141,154 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 97.32 |
| Mean single sequence MFE | -19.55 |
| Consensus MFE | -19.55 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1141098 56 - 2685023 UACGGGACUCGAACCCGUGUUACCGCCGUGAAAGGGCGGUGUCUUAACCGCUUGAC ((((((.......)))))).(((((((.......)))))))............... ( -19.10) >sp_agal.tRNA 3226 56 - 2160275 UACGGGAUUCGAACCCGUGUUACCGCCGUGAAAAGGCGGUGUCUUAACCCCUUGAC ((((((.......)))))).(((((((.......)))))))............... ( -19.70) >sp_mutans.tRNA 4601 56 - 2030929 UACGGGAUUCGAACCCGUGUUACCGCCGUGAAAAGGCGGUGUCUUAACCCCUUGAC ((((((.......)))))).(((((((.......)))))))............... ( -19.70) >sp_pneumo.tRNA 5437 56 - 2038623 UACGGGAUUCGAACCCGUGUUACCGCCGUGAAAAGGCGGUGUCUUAACCCCUUGAC ((((((.......)))))).(((((((.......)))))))............... ( -19.70) >consensus UACGGGAUUCGAACCCGUGUUACCGCCGUGAAAAGGCGGUGUCUUAACCCCUUGAC ((((((.......)))))).(((((((.......)))))))............... (-19.55 = -19.55 + 0.00) # Strand winner: forward (0.55)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:19 2006