Locus 36

Sequence ID sy_sapro.rRNA
Location 746,757 – 747,197
Length 440
Max. P 0.998429
window82 window83 window84 window85 window86 window87 window88

overview

Window 2

Location 746,757 – 746,877
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 99.17
Mean single sequence MFE -40.95
Consensus MFE -41.10
Energy contribution -42.10
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.75
Structure conservation index 1.00
SVM decision value 3.10
SVM RNA-class probability 0.998429
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746757 120 + 2516583
AGCUGUGGAUUGUCCGUAAGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGCAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGG
.((((...(((((((....)))))))((((.....((.(((((((.((......(((((.((....)).)))))...)).))))))))).....))))........)))).......... ( -43.10)
>sy_haemo.rRNA 882928 119 + 2685023
AGCUGUGGAUUGUCCGU-AGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGCAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGG
.((((...(((((((..-.)))))))((((.....((.(((((((.((......(((((.((....)).)))))...)).))))))))).....))))........)))).......... ( -38.80)
>consensus
AGCUGUGGAUUGUCCGU_AGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGCAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGG
.((((...(((((((....)))))))((((.....((.(((((((.((......(((((.((....)).)))))...)).))))))))).....))))........)))).......... (-41.10 = -42.10 +   1.00)

alignment

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secondary structure

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dotplot

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Window 3

Location 746,757 – 746,877
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -20.66
Consensus MFE -21.41
Energy contribution -21.41
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 1.04
SVM decision value 0.92
SVM RNA-class probability 0.882377
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746757 120 - 2516583
CCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAGCGCUCCACAUGUCCUUGCGAUCAUGCUUCAACGCCCUUAGAACGCUCUCCUACCAUUGUCCUUACGGACAAUCCACAGCU
..........(((.........((.........(((((((.((....((((((.....)).)))).......)).)))))))..........))(((((((....)))))))....))). ( -21.41)
>sy_haemo.rRNA 882928 119 - 2685023
CCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAGCGCUCCACAUGUCCUUGCGAUCAUGCUUCAACGCCCUUAGAACGCUCUCCUACCAUUGUCCU-ACGGACAAUCCACAGCU
..........(((.........((.........(((((((.((....((((((.....)).)))).......)).)))))))..........))(((((((.-..)))))))....))). ( -19.91)
>consensus
CCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAGCGCUCCACAUGUCCUUGCGAUCAUGCUUCAACGCCCUUAGAACGCUCUCCUACCAUUGUCCU_ACGGACAAUCCACAGCU
..........(((.........((.........(((((((.((....((((((.....)).)))).......)).)))))))..........))(((((((....)))))))....))). (-21.41 = -21.41 +   0.00) 
# Strand winner: forward (1.00)

alignment

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secondary structure

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dotplot

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Window 4

Location 746,837 – 746,957
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -36.10
Consensus MFE -36.10
Energy contribution -36.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 1.00
SVM decision value 1.61
SVM RNA-class probability 0.967627
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746837 120 - 2516583
CCUCAGCUUAGGACCCGACUAACCCAGAGCGGACGAGCCUUCCUCUGGAAACCUUAGUCAAUCGGUGGACGGGAUUCUCACCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAG
......(((((((...((((((.((((((.(((......))))))))).....))))))..((((((((((((.......))))))....(.....).)))))).........))))))) ( -36.10)
>sy_haemo.rRNA 883007 120 - 2685023
CCUCAGCUUAGGACCCGACUAACCCAGAGCGGACGAGCCUUCCUCUGGAAACCUUAGUCAAUCGGUGGACGGGAUUCUCACCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAG
......(((((((...((((((.((((((.(((......))))))))).....))))))..((((((((((((.......))))))....(.....).)))))).........))))))) ( -36.10)
>consensus
CCUCAGCUUAGGACCCGACUAACCCAGAGCGGACGAGCCUUCCUCUGGAAACCUUAGUCAAUCGGUGGACGGGAUUCUCACCCGUCUUUCGCUACUCACACCGGCAUUCUCACUUCUAAG
......(((((((...((((((.((((((.(((......))))))))).....))))))..((((((((((((.......))))))....(.....).)))))).........))))))) (-36.10 = -36.10 +   0.00) 
# Strand winner: forward (0.99)

alignment

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secondary structure

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dotplot

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Window 5

Location 746,917 – 747,037
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 94.17
Mean single sequence MFE -45.70
Consensus MFE -42.00
Energy contribution -42.50
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.92
SVM decision value 0.41
SVM RNA-class probability 0.723633
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746917 120 + 2516583
AGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGAUAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCAUUAUUCGUUUUAAGCGAUGGGGGGACGCAGUA
..((((((((.(((..(((.....((((((...(((.(.(((....))).).)))...)))).(((((........))))).))))).....((((.....)))).))).))))).))). ( -43.50)
>sy_haemo.rRNA 883087 120 + 2685023
AGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCUAGCAUCGUUUUAAUCGAUGGGGGGACGCAGUA
..((((((((.(((...(((((..((((((...(((.(.(((....))).).)))...)))).(((((........))))).))..)))))((((.......))))))).))))).))). ( -47.90)
>consensus
AGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCAAGAAUCGUUUUAAGCGAUGGGGGGACGCAGUA
..((((((((.((((.((((((.(((((((...(((.(.(((....))).).)))...)))).(((((........)))))...........)))..)))))).).))).))))).))). (-42.00 = -42.50 +   0.50)

alignment

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secondary structure

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dotplot

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Window 6

Location 747,037 – 747,157
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 99.17
Mean single sequence MFE -39.05
Consensus MFE -39.30
Energy contribution -39.05
Covariance contribution -0.25
Combinations/Pair 1.02
Mean z-score -2.47
Structure conservation index 1.01
SVM decision value 2.29
SVM RNA-class probability 0.991864
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 747037 120 + 2516583
GGAUAGGCGAAGCGUACGAUUGGAUUGUACGUCCAAGCAGUGAGAUUGAGUGUUAGGCAAAUCCGGCACUCUUAAGAUUGAGCUGUGAUGGGGAGAGGAAAUUGUUUCCUCGAGUCGUUG
.....(((((.(((((((((...)))))))))(((.(((((..((((((((((..((....))..))))))....))))..)))))..)))...((((((.....))))))...))))). ( -40.20)
>sy_haemo.rRNA 883207 120 + 2685023
GGAUAGGCGAAGCGUACGAUUGGAUUGUACGUCUAAGCAGUGAGAUUGAGUGUUAGGCAAAUCCGGCACUCUUAAGAUUGAGCUGUGAUGGGGAGAGGAAAUUGUUUCCUCGAGUCGUUG
.....(((((.(((((((((...)))))))))(((.(((((..((((((((((..((....))..))))))....))))..)))))..)))...((((((.....))))))...))))). ( -37.90)
>consensus
GGAUAGGCGAAGCGUACGAUUGGAUUGUACGUCCAAGCAGUGAGAUUGAGUGUUAGGCAAAUCCGGCACUCUUAAGAUUGAGCUGUGAUGGGGAGAGGAAAUUGUUUCCUCGAGUCGUUG
.....(((((.(((((((((...)))))))))(((.(((((..((((((((((..((....))..))))))....))))..)))))..)))...((((((.....))))))...))))). (-39.30 = -39.05 +  -0.25)

alignment

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secondary structure

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dotplot

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Window 7

Location 747,037 – 747,157
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -22.60
Consensus MFE -22.85
Energy contribution -22.60
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -1.79
Structure conservation index 1.01
SVM decision value 1.24
SVM RNA-class probability 0.934903
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 747037 120 - 2516583
CAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCACUGCUUGGACGUACAAUCCAAUCGUACGCUUCGCCUAUCC
.........((((((.....)))))).......................(((((..((.....))...))))).........((..((.(((((.........)))))))..))...... ( -22.60)
>sy_haemo.rRNA 883207 120 - 2685023
CAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCACUGCUUAGACGUACAAUCCAAUCGUACGCUUCGCCUAUCC
.........((((((.....)))))).......................(((((..((.....))...))))).........((..((.(((((.........)))))))..))...... ( -22.60)
>consensus
CAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCACUGCUUAGACGUACAAUCCAAUCGUACGCUUCGCCUAUCC
.........((((((.....)))))).......................(((((..((.....))...))))).........((..((.(((((.........)))))))..))...... (-22.85 = -22.60 +  -0.25) 
# Strand winner: forward (1.00)

alignment

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secondary structure

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dotplot

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Window 8

Location 747,077 – 747,197
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -28.10
Consensus MFE -28.35
Energy contribution -28.10
Covariance contribution -0.25
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 1.01
SVM decision value 2.53
SVM RNA-class probability 0.994957
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 747077 120 - 2516583
CCACAAUUCUAGCUAGAGGCUUUUCUUGGCAGUGUGAAAUCAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCA
................((((...(((.(((..(((((..((...))...((((((.....))))))......)))))((((........))))))))))...)))).............. ( -27.00)
>sy_haemo.rRNA 883247 120 - 2685023
CCUAUUAUCUAUCUAGAGGCUUUUCUCGGCAGUGUGAAAUCAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCA
................((((...((.((((..(((((..((...))...((((((.....))))))......)))))((((........))))))))))...)))).............. ( -29.20)
>consensus
CCAAAAAUCUAGCUAGAGGCUUUUCUCGGCAGUGUGAAAUCAACGACUCGAGGAAACAAUUUCCUCUCCCCAUCACAGCUCAAUCUUAAGAGUGCCGGAUUUGCCUAACACUCAAUCUCA
................((((...((.((((..(((((..((...))...((((((.....))))))......)))))((((........))))))))))...)))).............. (-28.35 = -28.10 +  -0.25) 
# Strand winner: forward (0.98)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:40 2006