| Sequence ID | sp_mutans.tRNA |
|---|---|
| Location | 1,678,260 – 1,678,315 |
| Length | 55 |
| Max. P | 0.999619 |
| Location | 1,678,260 – 1,678,315 |
|---|---|
| Length | 55 |
| Sequences | 2 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 94.55 |
| Mean single sequence MFE | -12.45 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sp_mutans.tRNA 1678260 55 + 2030929 GUUAAAUGGUAUAAUAGAGCAAUGGUAAUGCUCCGUUCCGAGUUCGAUUCUCGGU ............((..(((((.......)))))..))(((((.......))))). ( -12.10) >sp_agal.tRNA 1705732 55 + 2160275 GUUAAAUGGUAUAAUAGAGCAAUGGUAAUGCUCAAUUCCGAGUUCAAUUCUCGGU ................(((((.......)))))....(((((.......))))). ( -12.80) >consensus GUUAAAUGGUAUAAUAGAGCAAUGGUAAUGCUCAAUUCCGAGUUCAAUUCUCGGU ................(((((.......)))))....(((((.......))))). (-12.35 = -12.35 + -0.00)
| Location | 1,678,260 – 1,678,315 |
|---|---|
| Length | 55 |
| Sequences | 2 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 94.55 |
| Mean single sequence MFE | -14.25 |
| Consensus MFE | -14.30 |
| Energy contribution | -15.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.51 |
| Structure conservation index | 1.00 |
| SVM decision value | 3.79 |
| SVM RNA-class probability | 0.999619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sp_mutans.tRNA 1678260 55 - 2030929 ACCGAGAAUCGAACUCGGAACGGAGCAUUACCAUUGCUCUAUUAUACCAUUUAAC .(((((.......)))))...((((((.......))))))............... ( -14.80) >sp_agal.tRNA 1705732 55 - 2160275 ACCGAGAAUUGAACUCGGAAUUGAGCAUUACCAUUGCUCUAUUAUACCAUUUAAC .(((((.......)))))(((.(((((.......))))).)))............ ( -13.70) >consensus ACCGAGAAUCGAACUCGGAACGGAGCAUUACCAUUGCUCUAUUAUACCAUUUAAC .(((((.......)))))(((((((((.......)))))))))............ (-14.30 = -15.30 + 1.00) # Strand winner: forward (0.88)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:25 2006