| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,108,256 – 1,108,313 |
| Length | 57 |
| Max. P | 0.698870 |
| Location | 1,108,256 – 1,108,313 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 96.78 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -18.89 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1108256 57 - 2685023 ACGGGUUCGAACCGCCGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUA ..((((.((......))))))((((((.....)))))).((((........)))).. ( -20.20) >sp_agal.tRNA 21341 57 - 2160275 ACGGGAUCGAACCGCUGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUA ..(((.(((......))))))((((((.....)))))).((((........)))).. ( -18.20) >sp_mutans.tRNA 190901 57 - 2030929 ACGGGCUCGAACCGCUGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAACUGAGCUA ..(((.(((......))))))((((((.....)))))).((((........)))).. ( -18.20) >sp_pneumo.tRNA 186864 57 - 2038623 ACGGGAUCGAACCGCUGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUA ..(((.(((......))))))((((((.....)))))).((((........)))).. ( -18.20) >consensus ACGGGAUCGAACCGCUGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUA ..(((.(((......))))))((((((.....)))))).((((........)))).. (-18.89 = -18.70 + -0.19) # Strand winner: forward (0.93)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:14 2006