| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,110,081 – 1,110,137 |
| Length | 56 |
| Max. P | 0.969528 |
| Location | 1,110,081 – 1,110,137 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 88.99 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -15.12 |
| Energy contribution | -14.38 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1110081 56 - 2685023 GGGAAUCGAACCCUCGAGUGUCGGAACCACAAUCCGAUGCGUUAACCACUUCGCCA (((((((((....))))((((((((.......)))))))).........))).)). ( -16.50) >sp_agal.tRNA 97175 56 - 2160275 GGGAAUCGAACCCACGAAUGUCAGAGCCACAAUCUGAUGUGUUAACCACUUCACCA ((((((((......)))((((((((.......)))))))).........))).)). ( -11.70) >sp_mutans.tRNA 191699 56 - 2030929 GGGGAUCGAACCCACGCAUGCCAGAGCCACAAUCUGGUGUGUUAACCACUUCACCA (((.......)))..((((((((((.......)))))))))).............. ( -18.00) >sp_pneumo.tRNA 187636 56 - 2038623 GGGGAUCGAACCCACGCAUGCCAGAGCCACAAUCUGGUGUGUUAACCACUUCACCA (((.......)))..((((((((((.......)))))))))).............. ( -18.00) >consensus GGGAAUCGAACCCACGAAUGCCAGAGCCACAAUCUGAUGUGUUAACCACUUCACCA (((.......)))..((((((((((.......)))))))))).............. (-15.12 = -14.38 + -0.75) # Strand winner: forward (0.78)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:17 2006