Locus 29

Sequence ID sy_aureus.rRNA
Location 534,063 – 534,144
Length 81
Max. P 0.952738
window68

overview

Window 8

Location 534,063 – 534,144
Length 81
Sequences 2
Columns 81
Reading direction reverse
Mean pairwise identity 72.84
Mean single sequence MFE -21.60
Consensus MFE -20.20
Energy contribution -18.95
Covariance contribution -1.25
Combinations/Pair 1.30
Mean z-score -0.71
Structure conservation index 0.94
SVM decision value 1.43
SVM RNA-class probability 0.952738
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.rRNA 534063 81 - 2809430
CGACUACCAUCGACGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUGACCUCCUUGCUAUAGUCACCAGAC
.(((((.....(((((..(((((.....)))))))))).((((.((((...((.....)))))))))).)))))....... ( -20.80)
>sp_pneumo.rRNA 19926 81 - 2038623
CAACUACUUCCGGCGUUCUAGGGCUUAACUUCUGUGUUCGGCAUGGGUACAGGUGUAUCUCCUAGGCUAUCGUCACUUAAC
...........((((.(((((((..((...((((((..(.....)..))))))..))..)))))))....))))....... ( -22.40)
>consensus
CAACUACCACCGACGCUAAAGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUAACCCCCAGGCUAUAGUCACCAAAC
...........((((.(((((((.(((...(((((((((.....)))))))))..))).)))))))....))))....... (-20.20 = -18.95 +  -1.25) 
# Strand winner: reverse (0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:24 2006