Locus 49

Sequence ID sy_sapro.rRNA
Location 2,353,016 – 2,353,176
Length 160
Max. P 0.994609
window147 window148

overview

Window 7

Location 2,353,016 – 2,353,136
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -35.30
Consensus MFE -35.14
Energy contribution -33.37
Covariance contribution -1.77
Combinations/Pair 1.13
Mean z-score -2.83
Structure conservation index 1.00
SVM decision value 2.49
SVM RNA-class probability 0.994609
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 2353016 120 - 2516583
UGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCUGAAGGCAGACGCGGAGAACUGAAACAUCUUAGUACCCGCAGGAAGAGAAAGAAAAAUCGAUU
((((....))))...(((.....(((.(((..(((((((((.........))))))).))..))))))((((.(.(((((......))))).))))).................)))... ( -36.50)
>sy_haemo.rRNA 2541904 120 + 2685023
UGGGGGAACCCAGCACGAGUUAUGUCGUGUUAUCGACAAGUGAAUUCAUAGCUUGUCAGAAGGCAGACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAAUCGAUU
((((....))))...(((.....(((.(((..(((((((((.........))))))).))..))))))((((.(.(((((......))))).))))).................)))... ( -35.10)
>sy_aureus.rRNA 2278123 120 + 2809430
UGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAUUCGAUU
((((....))))...((((((...((.(((..(((((((((.........))))))).))..)))(..((((.(.(((((......))))).)))))..)........)).))))))... ( -34.30)
>consensus
UGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCAGACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAAUCGAUU
.(((....)))(((((((......)))))))((((((((((.........)))))))...........((((.(.(((((......))))).)))))...................))). (-35.14 = -33.37 +  -1.77) 
# Strand winner: reverse (1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 2,353,056 – 2,353,176
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -38.03
Consensus MFE -36.83
Energy contribution -36.17
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -2.34
Structure conservation index 0.97
SVM decision value 1.67
SVM RNA-class probability 0.971317
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 2353056 120 - 2516583
UGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCUGAAGGCAGACGCGGAGAACUGA
(((((((((.......)))))...)))).((.((((((..((((....))))...........(((.(((..(((((((((.........))))))).))..)))))).)))))).)).. ( -38.90)
>sy_haemo.rRNA 2541944 120 + 2685023
UGGGUAGCUGUAAGUAAGCGUUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAGCACGAGUUAUGUCGUGUUAUCGACAAGUGAAUUCAUAGCUUGUCAGAAGGCAGACCCGGAGAACUGA
(((((.(((.......)))....))))).((.((((((..((((....))))...........(((.(((..(((((((((.........))))))).))..)))))).)))))).)).. ( -38.70)
>sy_aureus.rRNA 2278163 120 + 2809430
UGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGA
(((((((((.......)))))...)))).((.((((((...(((....)))(((((((......)))))))...(((((((.........)))))))............)))))).)).. ( -36.50)
>consensus
UGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCACGAGUUAUGUCGUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCAGACCCGGAGAACUGA
(((((((((.......)))))...)))).((.((((((...(((....)))(((((((......)))))))...(((((((.........)))))))............)))))).)).. (-36.83 = -36.17 +  -0.66) 
# Strand winner: reverse (1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:52:33 2006