| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,140,761 – 1,140,818 |
| Length | 57 |
| Max. P | 0.867716 |
| Location | 1,140,761 – 1,140,818 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 96.84 |
| Mean single sequence MFE | -12.76 |
| Consensus MFE | -11.18 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1140761 57 - 2685023 ACAGAGUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((.((((......))))...((((((...........))))))....)))..... ( -14.50) >sy_sapro.tRNA 1003883 57 - 2516583 ACAGAGUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((.((((......))))...((((((...........))))))....)))..... ( -14.50) >sp_agal.tRNA 28306 57 - 2160275 ACGGAAUCGAACCGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((..........)))....(((((.......))))).((((........)))).. ( -11.60) >sp_mutans.tRNA 191440 57 - 2030929 ACGGAAUCGAACCGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((..........)))....(((((.......))))).((((........)))).. ( -11.60) >sp_pneumo.tRNA 187381 57 - 2038623 ACGGAAUCGAACCGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((..........)))....(((((.......))))).((((........)))).. ( -11.60) >consensus ACGGAAUCGAACCGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA .(((.......))).......(((((.......))))).((((........)))).. (-11.18 = -10.70 + -0.48) # Strand winner: forward (0.99)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:17 2006