Locus 26

Sequence ID sy_sapro.tRNA
Location 841,505 – 841,560
Length 55
Max. P 0.889306
window65

overview

Window 5

Location 841,505 – 841,560
Length 55
Sequences 5
Columns 55
Reading direction reverse
Mean pairwise identity 89.09
Mean single sequence MFE -12.72
Consensus MFE -14.10
Energy contribution -12.42
Covariance contribution -1.68
Combinations/Pair 1.31
Mean z-score -1.18
Structure conservation index 1.11
SVM decision value 0.96
SVM RNA-class probability 0.889306
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.tRNA 841505 55 - 2516583
UGGGAAUCGAACCCACAACAUCAGCUUGGAAGGCUGAGGUUUUGCCAUUAAACUA
((((.......)))).....((((((.....))))))((.....))......... ( -13.40)
>sy_haemo.tRNA 971009 55 - 2685023
UGGGAAUCGAACCCACAACAUCAGCUUGGAAGGCUGAGGUUUUGCCAUUAAACUA
((((.......)))).....((((((.....))))))((.....))......... ( -13.40)
>sy_aureus.tRNA 692024 55 - 2809430
UGGGAAUCGAACCCACAACAUCAGCUUGGAAGGCUGAGGUUUUGCCAUUAAACUA
((((.......)))).....((((((.....))))))((.....))......... ( -13.40)
>sp_mutans.tRNA 190979 55 - 2030929
CGAGAAUCGAACUCGCGACAACAGCUUGGAAGGCUGUAGUUUUACCACUAAACUA
((((.......)))).(((.((((((.....)))))).))).............. ( -11.70)
>sp_agal.tRNA 255383 55 - 2160275
CGAGAAUCGAACUCGCGACAACAGCUUGGAAGGCUGUAGUUUUACCACUAAACUA
((((.......)))).(((.((((((.....)))))).))).............. ( -11.70)
>consensus
UGGGAAUCGAACCCACAACAUCAGCUUGGAAGGCUGAGGUUUUGCCAUUAAACUA
((((.......)))).(((.((((((.....)))))).))).............. (-14.10 = -12.42 +  -1.68) 
# Strand winner: forward (0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:21 2006