| Sequence ID | sy_sapro.rRNA |
|---|---|
| Location | 2,304,660 – 2,304,780 |
| Length | 120 |
| Max. P | 0.988543 |
| Location | 2,304,660 – 2,304,780 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -45.77 |
| Consensus MFE | -45.20 |
| Energy contribution | -45.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sapro.rRNA 2304660 120 - 2516583 UUUGUAACACCCGAAGCCGGUGGAGUAACCAUUUAUGGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCU (((((..(((((((...((((..(((..(((....))).))).)))))))..))))..)))))......((((((.((....))....((((((((((....))))))))))..)))))) ( -46.20) >sy_haemo.rRNA 2542485 118 + 2685023 UUUGUAACACCCGAAGCCGGUGGAGUAACCAUUU--GGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCU (((((..(((((((...((((..(((..((....--)).))).)))))))..))))..)))))......((((((.((....))....((((((((((....))))))))))..)))))) ( -45.60) >sy_aureus.rRNA 2278732 119 + 2809430 UUUGUAACACCCGAAGCCGGUGGAGUAACCUUUUA-GGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCU (((((..(((((((...((((..(((..((.....-)).))).)))))))..))))..)))))......((((((.((....))....((((((((((....))))))))))..)))))) ( -45.50) >consensus UUUGUAACACCCGAAGCCGGUGGAGUAACCAUUUA_GGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCU (((((..(((((((...((((..(((..((......)).))).)))))))..))))..)))))......((((((.((....))....((((((((((....))))))))))..)))))) (-45.20 = -45.20 + -0.00) # Strand winner: reverse (0.99)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:53 2006