Locus 35

Sequence ID sy_sapro.rRNA
Location 746,477 – 746,637
Length 160
Max. P 0.952773
window79 window80 window81

overview

Window 9

Location 746,477 – 746,597
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -37.39
Consensus MFE -36.75
Energy contribution -36.00
Covariance contribution -0.75
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.98
SVM decision value 0.36
SVM RNA-class probability 0.704480
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746477 120 + 2516583
ACGAGGGGCCCUUAUCGGGUUACCGAAUUCAGACAAACUCCGAAUGCCAAUCAAUUUAACUUGGGAGUCAGAACGCGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACC
..((..(((.....((((....))))((((.((.....)).)))))))..))..........((..(((.(((((((((........)))))))))....(((......))).)))..)) ( -38.10)
>sy_haemo.rRNA 882648 120 + 2685023
ACGAGGGGCCCCUCUCGGGUUACCGAAUUCAGACAAACUCCGAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACC
.((((((....))))))((((......(((......(((((.((................)).)))))..(((((((((........)))))))))))).(((......))).))))... ( -36.69)
>consensus
ACGAGGGGCCCCUAUCGGGUUACCGAAUUCAGACAAACUCCGAAUGCCAAUCAAUUUAACUUGGGAGUCAGAACACGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACC
..((..(((.....((((....))))((((.((.....)).)))))))..))..........((..(((.(((((((((........)))))))))....(((......))).)))..)) (-36.75 = -36.00 +  -0.75)

alignment

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secondary structure

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dotplot

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Window 0

Location 746,517 – 746,637
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 97.50
Mean single sequence MFE -33.61
Consensus MFE -33.31
Energy contribution -32.56
Covariance contribution -0.75
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.99
SVM decision value 1.43
SVM RNA-class probability 0.952773
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746517 120 + 2516583
CGAAUGCCAAUCAAUUUAACUUGGGAGUCAGAACGCGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGU
......((..((.((((((((((((((((.(((((((((........)))))))))....(((......))).)))..((......)))))))).......))))))).))...)).... ( -34.11)
>sy_haemo.rRNA 882688 120 + 2685023
CGAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGU
......(((.(((((.((..(((((((((.(((((((((........)))))))))....(((......))).)))..((......))))))))..))...))))).))).......... ( -33.10)
>consensus
CGAAUGCCAAUCAAUUUAACUUGGGAGUCAGAACACGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGU
......((..((.((((((((((((((((.(((((((((........)))))))))....(((......))).)))..((......)))))))).......))))))).))...)).... (-33.31 = -32.56 +  -0.75)

alignment

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secondary structure

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dotplot

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Window 1

Location 746,517 – 746,637
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -28.51
Consensus MFE -27.45
Energy contribution -27.20
Covariance contribution -0.25
Combinations/Pair 1.03
Mean z-score -1.50
Structure conservation index 0.96
SVM decision value 0.03
SVM RNA-class probability 0.549371
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 746517 120 - 2516583
ACAUCCUUUUCCACUUAACAUAUAUUUUGGGACCUUAGCUGGUGGUCUGGGCUGUUUCCCUUUCGAACACGGACCUUAUCACCCGCGUUCUGACUCCCAAGUUAAAUUGAUUGGCAUUCG
..........(((.((((..((...(((((((.....((.((((((..((((((((((......))).)))).))).)))))).))........))))))).))..)))).)))...... ( -29.52)
>sy_haemo.rRNA 882688 120 - 2685023
ACAUCCUUUUCCACUUAACAUAUAUUUUGGGACCUUAGCUGGUGGUCUGGGCUGUUUCCCUUUCGAACACGGACCUUAUCACCCAUGUUCUGACUCCCAAGUUAAAUUAAUUGGCAUUCG
..........(((.((((..((...(((((((.(..(((.((((((..((((((((((......))).)))).))).))))))...)))..)..))))))).))..)))).)))...... ( -27.50)
>consensus
ACAUCCUUUUCCACUUAACAUAUAUUUUGGGACCUUAGCUGGUGGUCUGGGCUGUUUCCCUUUCGAACACGGACCUUAUCACCCACGUUCUGACUCCCAAGUUAAAUUAAUUGGCAUUCG
..........(((.((((..((...(((((((.(..(((.((((((..((((((((((......))).)))).))).))))))...)))..)..))))))).))..)))).)))...... (-27.45 = -27.20 +  -0.25) 
# Strand winner: forward (0.94)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:35 2006