Locus 7

Sequence ID sy_aureus.rRNA
Location 581,320 – 581,439
Length 119
Max. P 0.999003
window33

overview

Window 3

Location 581,320 – 581,439
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 72.66
Mean single sequence MFE -38.23
Consensus MFE -33.01
Energy contribution -29.32
Covariance contribution -3.69
Combinations/Pair 1.58
Mean z-score -2.19
Structure conservation index 0.86
SVM decision value 3.32
SVM RNA-class probability 0.999003
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.rRNA 581320 119 + 2809430
CGCAGUAGGAUAGGCGAAGCGUGCGAUUGG-AUUGCACGUCUAAGCAGUAAGGCUGAGUAUUAGGCAAAUCCGGUACUCGUUAAGGCUGAGCUGUGAUGGGGAGAAGACAUUGUGUCUUC
.......((((..((...(((((((((...-)))))))))((((.(((.....)))....))))))..))))....(((((((.(((...))).)))))))..((((((.....)))))) ( -38.00)
>sp_agal.rRNA 19694 119 + 2160275
CGCAGUAGGCUAACUAAACCAGACGAUUGGAAGUGUCUGGUCAAACAGUGAGGUGUGAUAUGAGUCAAAUGCUUAUAUCUUUAACAUUGAGCUGUGACGAGGAG-CGAAGUUUAGUAGCG
........((((.((((((((((((........))))))(((..(((((..((((((((((((((.....)))))))))....)))))..))))))))......-....)))))))))). ( -37.70)
>sp_mutans.rRNA 20270 119 + 2030929
CGCAGCAGGCUAACUAGAGCGUGCGAUUGGAAGAGCACGUCCAAGCAGUGAGGUGAGGACUGAGUCAAAUGCUUAGUUCUGUGCCACCAAGCUGUGACGGGGAG-CGAAGUUUAGUAGCG
(((.(((.(((......))).))).((((((...((.((((...(((((..((((((((((((((.....))))))))))....))))..)))))))))....)-)....)))))).))) ( -43.10)
>sp_pneumo.rRNA 18403 119 + 2038623
CGCAGUAGGCUAACUAAAGCAGACGAUUGGAAGAGUCUGUCUAAGCAGUGAGGUGUGAAUUGAGUCAAAUGCUUAAUUCUAUAACAUUGAGCUGUGAUGGGGAG-CGAAGUUUAGUAGCG
........((((.(((((((((((..........))))))(((.(((((..((((((((((((((.....)))))))))....)))))..)))))..)))....-.....))))))))). ( -34.10)
>consensus
CGCAGUAGGCUAACUAAAGCAGACGAUUGGAAGAGCACGUCCAAGCAGUGAGGUGUGAAAUGAGUCAAAUGCUUAAUUCUUUAACACUGAGCUGUGACGGGGAG_CGAAGUUUAGUAGCG
........(((.((((((((((((..........))))))((..(((((..((((((((((((((.....)))))))))....)))))..)))))...))..........))))))))). (-33.01 = -29.32 +  -3.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:50:53 2006