Locus 27

Sequence ID	sy_sapro.tRNA
Location	964,946 – 965,005
Length	59
Max. P	0.665872

overview

Window 6

Location	964,946 – 965,005
Length	59
Sequences	3
Columns	61
Reading direction	reverse
Mean pairwise identity	86.19
Mean single sequence MFE	-12.85
Consensus MFE	-11.82
Energy contribution	-11.60
Covariance contribution	-0.22
Combinations/Pair	1.08
Mean z-score	-1.26
Structure conservation index	0.92
SVM decision value	0.28
SVM RNA-class probability	0.665872
Prediction	RNA

Download alignment: ClustalW | MAF

>sy_sapro.tRNA 964946 59 - 2516583
GGCUCGAACCACUGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAA--UGGC
((((((.......((.(.((((((.....)))))).).)).......))))))..--.... ( -14.34)
>sy_haemo.tRNA 1108431 59 - 2685023
GAUUCGAACCUCUGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAA--UGGC
........((((((((.............)))))).((((........))))...--.)). ( -11.92)
>sp_mutans.tRNA 22402 61 - 2030929
GACUUGAACACGCGACCCUCUGAUUACAAAUCAGAUGCUCUACCAACUGAGCUAAGCCGGC
...........((.....((((((.....)))))).((((........))))...)).... ( -12.30)
>consensus
GACUCGAACCACUGACCCUCUGAUUAAAAGUCAGAUGCUCUACCAACUGAGCUAA__UGGC
................((((((((.....)))))).((((........))))......)). (-11.82 = -11.60 +  -0.22) 
# Strand winner: forward (0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:22 2006