| Sequence ID | sy_aureus.rRNA |
|---|---|
| Location | 582,843 – 582,924 |
| Length | 81 |
| Max. P | 0.980181 |
| Location | 582,843 – 582,924 |
|---|---|
| Length | 81 |
| Sequences | 4 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 73.85 |
| Mean single sequence MFE | -18.83 |
| Consensus MFE | -18.26 |
| Energy contribution | -16.70 |
| Covariance contribution | -1.56 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.32 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_aureus.rRNA 582843 81 - 2809430 CGACUACCAUCGACGCUAAGGAGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUGACCUCCUUGCUAUAGUCACCAGAC .(((((.....(((((..(((((.....)))))))))).((((.((((...((.....)))))))))).)))))....... ( -20.80) >sp_agal.rRNA 170051 81 - 2160275 CAACUACUUCCGGCGUUCUAGGGCUUAACUUCUGUGUUCGGCAUGAGAACAGGUGUAUCUCCUAGGCAAUUAUCACUUAAC ............(((((((...(((.(((......))).)))...)))))(((.......)))..)).............. ( -16.30) >sp_mutans.rRNA 375194 73 - 2030929 CAACUACUUCAGGCGUGCUAGGGCUUAACUGCUGUGUUCGGCAUGGAUACAGGUGUCUCCCCUAGGCUAUCAU-------- ...........(((...((((((....((..((((((((.....))))))))..))...))))))))).....-------- ( -19.60) >sp_pneumo.rRNA 346222 70 - 2038623 CAACUACUUCCGGCGUUCUAGGGCUUAACUUCUGUGUUCGGCAUGGGUACAGGUGUAUCUCCUAGGCUAU----------- ...........(((...((((((..((...((((((..(.....)..))))))..))..)))))))))..----------- ( -18.60) >consensus CAACUACUUCCGGCGUUCUAGGGCUUAACUUCUGUGUUCGGCAUGGGAACAGGUGUAUCCCCUAGGCUAU_AU________ ..............((.((((((....((.(((((((((.....))))))))).))...)))))))).............. (-18.26 = -16.70 + -1.56) # Strand winner: reverse (1.00)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:09 2006