Locus 9

Sequence ID sy_aureus.rRNA
Location 581,674 – 581,792
Length 118
Max. P 0.936901
window35

overview

Window 5

Location 581,674 – 581,792
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.86
Mean single sequence MFE -40.98
Consensus MFE -35.91
Energy contribution -37.85
Covariance contribution 1.94
Combinations/Pair 1.14
Mean z-score -2.10
Structure conservation index 0.88
SVM decision value 1.26
SVM RNA-class probability 0.936901
Prediction RNA

Download alignment: ClustalW | MAF

>sy_aureus.rRNA 581674 118 + 2809430
GCUAAACCGUAAGGUGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAG-CUUCUG-CGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUA
((...(((....)))...))....((....(((.(((((...((((((..((((..((...((((((.(-(....)-)..))))))...))..))))))))))...))))).)))..)). ( -41.80)
>sp_agal.rRNA 20039 118 + 2160275
GCUAAAUCGUAAGAUGAUGUAUAGGGGGUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGCUUAG-CGUAAG-CGAAGGUAUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUA
((...(((....)))...))......(((.(((.(((((...((((((..((((..((...((((((.(-(....)-)..))))))...))..))))))))))...))))).))).))). ( -40.70)
>sp_mutans.rRNA 20616 120 + 2030929
GCGAAAUCGUAAGAUGAAGUAUAGGGGGUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGCGCUUAGACGUUUGUCGAAGGUGUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUA
((...(((....)))...))......(((.(((.(((((...((((((..((((..((...((((((.(((....)))..))))))...))..))))))))))...))))).))).))). ( -40.70)
>sp_pneumo.rRNA 18749 118 + 2038623
GCUAAAUCGUAAGAUGAUGUAUAGGGGGUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGCUUAG-CGUAAG-CGAAGGUAUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUA
((...(((....)))...))......(((.(((.(((((...((((((..((((..((...((((((.(-(....)-)..))))))...))..))))))))))...))))).))).))). ( -40.70)
>consensus
GCUAAAUCGUAAGAUGAUGUAUAGGGGGUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGCUUAG_CGUAAG_CGAAGGUAUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUA
((...(((....)))...))......(((.(((.(((((...((((((..((((..((...((((((.(((....)))..))))))...))..))))))))))...))))).))).))). (-35.91 = -37.85 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:50:55 2006