| Sequence ID | sy_haemo.tRNA |
|---|---|
| Location | 1,109,077 – 1,109,135 |
| Length | 58 |
| Max. P | 0.891979 |
| Location | 1,109,077 – 1,109,135 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 97.93 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -20.74 |
| Energy contribution | -20.26 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.31 |
| Structure conservation index | 1.02 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.891979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_haemo.tRNA 1109077 58 - 2685023 AGGGGAUCGAACCCCCGACCUCACGGGUAUGAACCGUACGCUCUAGCCAGCUGAGCUA .((((.(((......)))))))((((.......))))..((((.((....)))))).. ( -19.60) >sy_sapro.tRNA 965591 58 - 2516583 AGGGGAUCGAACCCCCGACCUCACGGGUAUGAACCGUACGCUCUAGCCAGCUGAGCUA .((((.(((......)))))))((((.......))))..((((.((....)))))).. ( -19.60) >sp_agal.tRNA 27948 58 - 2160275 AGGGGAUCGAACCCCCGACCUCCCGGGUAUGAACCGGACGCUCUAGCCAGCUGAGCUA .((((.......))))......((((.......))))..((((.((....)))))).. ( -20.90) >sp_mutans.tRNA 22868 58 - 2030929 AGGGGAUCGAACCCCCGACCUCCCGGGUAUGAACCGGACGCUCUAGCCAGCUGAGCUA .((((.......))))......((((.......))))..((((.((....)))))).. ( -20.90) >sp_pneumo.tRNA 347126 58 - 2038623 AGGGGAUCGAACCCCCGACCUCCCGGGUAUGAACCGGACGCUCUAGCCAGCUGAGCUA .((((.......))))......((((.......))))..((((.((....)))))).. ( -20.90) >consensus AGGGGAUCGAACCCCCGACCUCCCGGGUAUGAACCGGACGCUCUAGCCAGCUGAGCUA .((((.(((......)))))))((((.......))))..((((.((....)))))).. (-20.74 = -20.26 + -0.48) # Strand winner: forward (0.94)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:15 2006