Locus 39

Sequence ID sy_sapro.rRNA
Location 748,037 – 748,317
Length 280
Max. P 0.990607
window99 window100 window101 window102

overview

Window 9

Location 748,037 – 748,157
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -52.50
Consensus MFE -52.50
Energy contribution -52.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 1.00
SVM decision value 2.22
SVM RNA-class probability 0.990607
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 748037 120 + 2516583
AGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUA
..(((.((((((((...((.......))...))))))))..)))(((..((((......))))((((((((((((((....))))))).)))))(((((.....))))).....))))). ( -52.50)
>sy_haemo.rRNA 884207 120 + 2685023
AGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUA
..(((.((((((((...((.......))...))))))))..)))(((..((((......))))((((((((((((((....))))))).)))))(((((.....))))).....))))). ( -52.50)
>consensus
AGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUA
..(((.((((((((...((.......))...))))))))..)))(((..((((......))))((((((((((((((....))))))).)))))(((((.....))))).....))))). (-52.50 = -52.50 +   0.00)

alignment

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secondary structure

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dotplot

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Window 0

Location 748,077 – 748,197
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -57.20
Consensus MFE -54.20
Energy contribution -57.20
Covariance contribution 3.00
Combinations/Pair 1.00
Mean z-score -2.88
Structure conservation index 0.95
SVM decision value 1.79
SVM RNA-class probability 0.977151
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 748077 120 + 2516583
UGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCC
.((.(((..((..((((((((((((((((((((((((....))))))).)))))(((((.....))))).....)))))....)))))))..)).(((((((....))).))))))))). ( -57.20)
>sy_haemo.rRNA 884247 120 + 2685023
UGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCC
.((.(((..((..((((((((((((((((((((((((....))))))).)))))(((((.....))))).....)))))....)))))))..)).(((((((....))).))))))))). ( -57.20)
>consensus
UGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCC
.((.(((..((..((((((((((((((((((((((((....))))))).)))))(((((.....))))).....)))))....)))))))..)).(((((((....))).))))))))). (-54.20 = -57.20 +   3.00)

alignment

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secondary structure

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dotplot

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Window 1

Location 748,197 – 748,317
Length 120
Sequences 2
Columns 120
Reading direction forward
Mean pairwise identity 99.17
Mean single sequence MFE -43.60
Consensus MFE -41.60
Energy contribution -41.60
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.95
SVM decision value -0.05
SVM RNA-class probability 0.505808
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 748197 120 + 2516583
UAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUCGCUGGGUAGCUAUGUAUGG
..((((((.(((((..((((..(((....)))....))))..)).(....)..))).))))))(((((...((((...(((((((((((....))))))..)))))...)))).))))). ( -43.60)
>sy_haemo.rRNA 884367 120 + 2685023
UAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUAUGG
..((((((.(((((..((((..(((....)))....))))..)).(....)..))).))))))(((((...((((...(((((((((((....))))))..)))))...)))).))))). ( -43.60)
>consensus
UAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUAUGG
..((((((.(((...............(((((....)))))....(....)..))).))))))(((((...((((...(((((((((((....))))))..)))))...)))).))))). (-41.60 = -41.60 +   0.00)

alignment

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secondary structure

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dotplot

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Window 2

Location 748,197 – 748,317
Length 120
Sequences 2
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -31.55
Consensus MFE -31.60
Energy contribution -32.10
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 1.00
SVM decision value 0.78
SVM RNA-class probability 0.849101
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.rRNA 748197 120 - 2516583
CCAUACAUAGCUACCCAGCGAUGCCGUUGGCACGACAACUGGUACACCAGAGGUAUGUCCAUCCCGGUCCUCUCGUACUAAGGACAGCUCCUCUCAAAUUUCCUACGCCCACGACGGAUA
.....(((.(((....))).)))((((((((........(((....)))((((..(((((....(((.....)))......)))))...)))).............)))...)))))... ( -29.30)
>sy_haemo.rRNA 884367 120 - 2685023
CCAUACAUAGCUACCCAGCUAUGCCGUUGGCACGACAACUGGUACACCAGAGGUAUGUCCAUCCCGGUCCUCUCGUACUAAGGACAGCUCCUCUCAAAUUUCCUACGCCCACGACGGAUA
.....(((((((....)))))))((((((((........(((....)))((((..(((((....(((.....)))......)))))...)))).............)))...)))))... ( -33.80)
>consensus
CCAUACAUAGCUACCCAGCGAUGCCGUUGGCACGACAACUGGUACACCAGAGGUAUGUCCAUCCCGGUCCUCUCGUACUAAGGACAGCUCCUCUCAAAUUUCCUACGCCCACGACGGAUA
.....(((((((....)))))))((((((((........(((....)))((((..(((((....(((.....)))......)))))...)))).............)))...)))))... (-31.60 = -32.10 +   0.50) 
# Strand winner: forward (1.00)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:52 2006