Locus 50

Sequence ID sy_sapro.tRNA
Location 204,411 – 204,465
Length 54
Max. P 0.949609
window149

overview

Window 9

Location 204,411 – 204,465
Length 54
Sequences 3
Columns 54
Reading direction forward
Mean pairwise identity 95.06
Mean single sequence MFE -18.07
Consensus MFE -17.17
Energy contribution -17.07
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -2.38
Structure conservation index 0.95
SVM decision value 1.39
SVM RNA-class probability 0.949609
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.tRNA 204411 54 + 2516583
GCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCAGUGGUUCGAGCCCA
........(((.((((..(((((((((.....)))))))))..))))..))).. ( -17.60)
>sy_haemo.tRNA 184017 54 + 2685023
GCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCAGAGGUUCGAAUCCU
........((..((((.((((((((((.....)))))))))).))))....)). ( -18.30)
>sy_aureus.tRNA 581379 54 + 2809430
GCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCAGAGGUUCGAAUCCU
........((..((((.((((((((((.....)))))))))).))))....)). ( -18.30)
>consensus
GCUCAGUUGGUAGAGCAUCUGACUUUUAAUCAGAGGGUCAGAGGUUCGAAUCCU
........(((.((((.((((((((((.....)))))))))).))))..))).. (-17.17 = -17.07 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:52:34 2006