Locus 25

Sequence ID sy_sapro.tRNA
Location 748,852 – 748,911
Length 59
Max. P 0.945042
window64

overview

Window 4

Location 748,852 – 748,911
Length 59
Sequences 2
Columns 59
Reading direction reverse
Mean pairwise identity 93.22
Mean single sequence MFE -19.20
Consensus MFE -19.45
Energy contribution -19.20
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 1.01
SVM decision value 1.35
SVM RNA-class probability 0.945042
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.tRNA 748852 59 - 2516583
UGACGGGUUCGAACCGCCGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAGCUGAGCUA
....((((.((......))))))((((((.....)))))).((((........)))).. ( -20.20)
>sp_mutans.tRNA 22029 59 - 2030929
UAACGGGCUCGAACCGCUGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAACUGAGCUA
....(((.(((......))))))((((((.....)))))).((((........)))).. ( -18.20)
>consensus
UAACGGGCUCGAACCGCCGACCCUCUGCUUGUAAGGCAGAUGCUCUCCCAACUGAGCUA
....(((.(((......))))))((((((.....)))))).((((........)))).. (-19.45 = -19.20 +  -0.25) 
# Strand winner: forward (0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:51:20 2006