| Sequence ID | sy_sapro.rRNA |
|---|---|
| Location | 2,351,417 – 2,351,577 |
| Length | 160 |
| Max. P | 0.643909 |
| Location | 2,351,417 – 2,351,537 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -36.92 |
| Energy contribution | -36.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.47 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sapro.rRNA 2351417 120 - 2516583 GCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGGAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAA ........(((((....(....).....)))))((((((..((((....))))..)))))).((((.((....((....))..((((...........)))).)).)))).......... ( -36.60) >sy_haemo.rRNA 2540306 120 + 2685023 GCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUGCAAGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAA ........(((((....(....).....)))))(((((((.((((....)))).))))))).((((.((....((....))..((((...........)))).)).)))).......... ( -37.30) >sy_aureus.rRNA 2276524 120 + 2809430 GCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAA ........(((((....(....).....)))))(((((((.((((....)))).))))))).((((.((....((....))..((((...........)))).)).)))).......... ( -36.60) >consensus GCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAA ........(((((....(....).....)))))(((((((.((((....)))).))))))).((((.((....((....))..((((...........)))).)).)))).......... (-36.92 = -36.70 + -0.22) # Strand winner: reverse (0.65)
| Location | 2,351,457 – 2,351,577 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -39.42 |
| Energy contribution | -39.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.36 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>sy_sapro.rRNA 2351457 120 - 2516583 AAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGGAGAGCCGCAGUGAAUAGGCCCAAG ........(((.((((((......)))))).....(((((((......(((((....(....).....)))))..((((..((((....))))..)))))))).)))......))).... ( -39.10) >sy_haemo.rRNA 2540346 120 + 2685023 AAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUGCAAGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAG ........(((.((((((......)))))).....(((((((......(((((....(....).....)))))..(((((.((((....)))).))))))))).)))......))).... ( -39.80) >sy_aureus.rRNA 2276564 120 + 2809430 AAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAG ........(((.((((((......)))))).....(((((((......(((((....(....).....)))))..(((((.((((....)))).))))))))).)))......))).... ( -39.10) >consensus AAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAG ........(((.((((((......)))))).....(((((((......(((((....(....).....)))))..(((((.((((....)))).))))))))).)))......))).... (-39.42 = -39.20 + -0.22) # Strand winner: reverse (0.98)
Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:52:17 2006