Locus 52

Sequence ID sy_sapro.tRNA
Location 966,185 – 966,242
Length 57
Max. P 0.833249
window151

overview

Window 1

Location 966,185 – 966,242
Length 57
Sequences 3
Columns 57
Reading direction reverse
Mean pairwise identity 98.83
Mean single sequence MFE -13.23
Consensus MFE -12.80
Energy contribution -13.13
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.97
SVM decision value 0.72
SVM RNA-class probability 0.833249
Prediction RNA

Download alignment: ClustalW | MAF

>sy_sapro.tRNA 966185 57 - 2516583
ACAGAAUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA
.(((..(((......)))....((((((...........))))))....)))..... ( -10.70)
>sy_haemo.tRNA 1109748 57 - 2685023
ACAGAGUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA
.(((.((((......))))...((((((...........))))))....)))..... ( -14.50)
>sy_aureus.tRNA 833986 57 - 2809430
ACAGAGUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA
.(((.((((......))))...((((((...........))))))....)))..... ( -14.50)
>consensus
ACAGAGUCGAACUGCCGACACAUGGAGCUUCAAUCCAUUGCUCUACCAACUGAGCUA
...(.((((......)))).)(((((.......))))).((((........)))).. (-12.80 = -13.13 +   0.33) 
# Strand winner: forward (0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz $RNAz::rnazVersion) on Fri Apr 7 15:52:37 2006