Publications - Supplemental material

Please find below supplemental material corresponding to publications of our group. Currently, we list 133 supplements. If you have problems accessing electronic information, please let us know:

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BIOINF 07-023: Identification of small non-coding RNAs in <i>Pseudomonas aeruginosa</i> using RNomics and bioinformatic tools

Elisabeth Sonnleitner, Theresa Sorger-Domenigg, Monika J. Madej, Sven Findeiß, Jörg Hackermüller, Alexander Hüttenhofer, Peter Stadler, Udo Bläsi and Isabella Moll

Data source
  •  List of used genomes/annotation PS PDF
  •  RNomics Sequences
    •  RNAz results based on NcDNAlign
  •  all predicted RNAz hits
  •  RNAz hits without any annotation
    • order of custom annotations: 1) known PAO1 ncRNAs (Ovelap) 2) tRNAscan (BLAST) 3) Rfam (BLAST) 4) Noncode (BLAST) 5) tmRNA-db (BLAST) 6) ncRNAdb (BLAST) 7) Livny et al. 2006 (BLAST) 8) Rnomics (BLAST) 9) Gonzales et al. 2008 (BLAST)     RNAz results based on multiz run
  •  all predicted RNAz hits
  •  RNAz hits without any annotation
    • order of custom annotations: 1) known PAO1 ncRNAs (Overlap) 2) tRNAscan (BLAST) 3) Rfam (BLAST) 4) Noncode (BLAST) 5) tmRNA-db (BLAST) 6) ncRNAdb (BLAST) 7) Livny et al. 2006 (BLAST) 8) Rnomics (BLAST) 9) Gonzales et al. 2008 (BLAST)     ncRNA loci and Rfam seed alignments
  •  yybP-ykoY (multiz locus34)
  •  FMN (multiz locus88; NcDNAling locus50,51)
    •  phrS Data
  •   phrS sequence alignment phrS_alignment.stk
  •   phrS seuqnce/orf alignment and consensus secondary structure JPG EPS
    •