Bioinformatik I: Grundlagen
Ort: IZBI Kreuzstrasse 7bZeit: Mittwoch 17:15 Uhr
Email für die gesamte Studentengruppe: bio1ws04@bioinf.uni-leipzig.de
Background Information
- Robert Giegerich's Overview of Alignments
-
Zum Thema ``Stochastische Alignments'' empfiehlt der Chefkoch:
[110] 02-03-012 [Abstract] [Postscript] [PDF] [
Published Version]
[Software]
Stochastic Pairwise Alignments
U. Mückstein, I.L. Hofacker, P.F. Stadler
Bioinformatics 18 (Supplement 2), S153-S160 (2002)
- Online Lectures on Bioinformatics from the MPI for Molecular Genetics in Berlin
- U.S.C. Sequence Alignment Package
- Clustal W
- PHYLIP is a free package of programs for inferring phylogenies.
- Faster reliable phylogenetic analysis by Vincent Berry and David Bryant is a very good overview of splits, strong and weak hierarchies, and related topics. Final published version: see here (Proceedings of the RECOMB 1999).
- Splits Tree Daniel Huson's package for "Analyzing and Visualizing Evolutionary Data".
- Neighbor Joining Algorithm
- Maximum Parsimony Tree Reconstruction
- Lots of References on Phylogeny Reconstruction
- Tree Puzzle
- All Phylogeny Programs
- Java implementations of algorithms from Durbin's book.