Publications - Supplemental material
Please find below supplemental material corresponding to publications of our group. Currently, we list 133 supplements.
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BIOINF 07-007: <tt>NcDNAlign</tt>: Plausible Multiple Alignments of Non-Protein-Coding Genomic Sequences
Dominic Rose, Jana Hertel, Kristin Reiche, Jörg Hackermüller, Peter F. Stadler
Further supplementary tables and figures: PDF
Example application 1: Ultra-conserved regions (UCRs) in nematodes
We identified 530 UCRs and 4,479 CNEs, all coordinates resp. sequences refer to Caenorhabditis elegans.Example application 2: Ultra-conserved regions (UCRs) in teleosts
We identified 2,377 UCRs, all coordinates resp. sequences refer to Takifugu rubripes.Example application 3: Prediction of novel structured non-coding RNAs in gammaproteobacterial genomes
- Browsing RNAz predictions of gammaproteobacteria
- FASTA sequence file
- BED coordinate file
Further supplementary tables and figures: PDF
Download NcDNAlign: http://www.bioinf.uni-leipzig.de/Software/NcDNAlign