Publications - Working papers
Please find below working papers of our group. Currently, we list 58 working papers.
In the list are only not published papers present. If you look for a preprint of an already published paper you must look in the "Published papers" section.
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©NOTICE: All working papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.
Comparative Detection of Processed Small RNAs in Archaea
Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler
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Abstract
Enzymating splicing in Archaeal tRNAs is guided by bulgehelix-
bulge structural elements, while much less seems to be known about
splicing in other small RNAs. We conduct a genome-wide analysis of several
archaeal genomes to identify putative BHB elements and compare
our ndings with available RNA-seq data. We also provide an analysis
of the viability of using pattern-based and stochastic structural scanning
algorithms for in silico studies of the occurance of BHB motifs. Furthermore,
we comment on splicing motifs in other small RNAs, which mostly
do not t the pattern of bulge-helix-bulge motifs.