Publications - Working papers
Please find below working papers of our group. Currently, we list 58 working papers.
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<tt>bbq</tt>: A Tool for Discovering Regulatory Modules using Weighted Barbeques
Axel Mosig
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Status: Submitted
ECCB 2005
Abstract
<b>Summary:</b><br/>
We present a multiple-alignment-like approach for discovering clustered occurences of transcription factor binding sites, which are known to regulate the expression of genes in Eucaryotes. Our tool bbqi is based on a weighted version of the so-called best-barbeque problem, which incorporates a p-value-like scoring scheme to detect binding site clusters that are likely to be conserved across different species due to a functional role in gene regulation.<br/>
<b>Availability:</b><br/>
The implementation bbq can be downloaded from our software server.