Publications - Working papers
Please find below working papers of our group. Currently, we list 58 working papers.
In the list are only not published papers present. If you look for a preprint of an already published paper you must look in the "Published papers" section.
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Analysis of Phylogenetic Footprint Patterns in Large Gene Clusters
Sonja J. Prohaska, Claudia Fried, Christoph Flamm, Peter F. Stadler
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Status: Submitted
GCB 2003
Abstract
Large scale analysis on potential gene regulatory elements can now be performed on large sets of long sequences. The novel program 'tracker' - designed for this purpose - is currently the only method that provides sufficient quantitative data on non-coding sequence evolution to perform statistical analysis and phylogenetic reconstructions relying on the distribution of footprints over input sequences. We will briefly introduce the 'tracker' algorithm, compare the performance of our novel method with other available programs and discuss applications to the evolution of the developmental gene cluster HoxA and the evolution of footprints after cluster duplication.