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BIOINF 09-050: Genomic Organization of Eukaryotic tRNAs

Clara Bermudez-Santana, Camille Stephan-Otto Attolini, Toralf Kirsten, Jan Engelhardt, Sonja J. Prohaska, Stephan Steigele, Peter F. Stadler


Genome source [Genomesources.pdf]

tRNAscan-SE predictions


Species gff file
Arabidopsis_lyrata Arabidopsis_lyrata.gff
Arabidopsis_thaliana Arabidopsis_thaliana.gff
Aspergillus_fumigatus Aspergillus_fumigatus.gff
Batrachochytrium_dendrobatidis Batrachochytrium_dendrobatidis.gff
Bos_taurus Bos_taurus.gff
Caenorhabditis_brenneri Caenorhabditis_brenneri.gff
Caenorhabditis_briggsae Caenorhabditis_briggsae.gff
Caenorhabditis_elegans Caenorhabditis_elegans.gff
Caenorhabditis_japonica Caenorhabditis_japonica.gff
Caenorhabditis_remanei Caenorhabditis_remanei.gff
Canis_familiaris Canis_familiaris.gff
Chlamydomonas_reinhardtii Chlamydomonas_reinhardtii.gff
Ciona_intestinalis Ciona_intestinalis.gff
Cryptococcus_neoformans_var_JEC21 Cryptococcus_neoformans_var_JEC21.gff
Cryptosporidium_parvum_Iowa_II Cryptosporidium_parvum_Iowa_II.gff
Danio_rerio Danio_rerio.gff
Dasypus_novemcinctus Dasypus_novemcinctus.gff
Dictyostelium_discoideum Dictyostelium_discoideum.gff
Drosophila_ananassae Drosophila_ananassae.gff
Drosophila_erecta Drosophila_erecta.gff
Drosophila_grimshawi Drosophila_grimshawi.gff
Drosophila_melanogaster Drosophila_melanogaster.gff
Drosophila_mojavensis Drosophila_mojavensis.gff
Drosophila_persimilis Drosophila_persimilis.gff
Drosophila_pseudoobscura Drosophila_pseudoobscura.gff
Drosophila_sechellia Drosophila_sechellia.gff
Drosophila_simulans Drosophila_simulans.gff
Drosophila_virilis Drosophila_virilis.gff
Drosophila_willistoni Drosophila_willistoni.gff
Drosophila_yakuba Drosophila_yakuba.gff
Echinops_telfairi Echinops_telfairi.gff
Equus_caballus Equus_caballus.gff
Felis_catus Felis_catus.gff
Gallus_gallus Gallus_gallus.gff
Gasterosteus_aculeatus Gasterosteus_aculeatus.gff
Giardia_lamblia Giardia_lamblia.gff
Gorilla_gorilla Gorilla_gorilla.gff
Homo_sapiens Homo_sapiens.gff
Leishmania_infantum_JPCM5 Leishmania_infantum_JPCM5.gff
Lottia_gigantea Lottia_gigantea.gff
Loxodonta_africana Loxodonta_africana.gff
Macaca_mulata Macaca_mulata.gff
Microcebus_murinus Microcebus_murinus.gff
Monodelphis_domestica Monodelphis_domestica.gff
Monosiga_brevicollis Monosiga_brevicollis.gff
Mus_muscullus Mus_muscullus.gff
Naegleria_gruberi Naegleria_gruberi.gff
Nematostella_vectensis Nematostella_vectensis.gff
Ornithorhynchus_anatinus Ornithorhynchus_anatinus.gff
Oryctolagus_cuniculus Oryctolagus_cuniculus.gff
Oryza_sativa Oryza_sativa.gff
Oryzias_latipes Oryzias_latipes.gff
Ostreococcus_lucimarinus Ostreococcus_lucimarinus.gff
Otolemur_garnettii Otolemur_garnettii.gff
Pan_troglodytes Pan_troglodytes.gff
Physcomitrella_patens Physcomitrella_patens.gff
Phytophthora_ramorum Phytophthora_ramorum.gff
Phytophthora_sojae Phytophthora_sojae.gff
Pichia_stipitis Pichia_stipitis.gff
Plasmodium_falciparum Plasmodium_falciparum.gff
Pongo_pygmaeus Pongo_pygmaeus.gff
Popolus_trichocarpa Popolus_trichocarpa.gff
Rattus_norvegicus Rattus_norvegicus.gff
Selaginella_moellendorffii Selaginella_moellendorffii.gff
Sorghum_bicolor Sorghum_bicolor.gff
Sporobolomyces_roseus Sporobolomyces_roseus.gff
Takifugu_rubripes Takifugu_rubripes.gff
Tetrahymena_thermophila Tetrahymena_thermophila.gff
Tetraodon_nigroviridis Tetraodon_nigroviridis.gff
Thalassiosira_pseudonana Thalassiosira_pseudonana.gff
Trichoplax_adhaerans Trichoplax_adhaerans.gff
Trypanosoma_brucei Trypanosoma_brucei.gff
Volvox_carteri Volvox_carteri.gff
Xenopus_tropicalis Xenopus_tropicalis.gff