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BIOINF 06-013: Identification of Homoplastic Characters in Multiple Sequence Alignments
Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska and Peter F. Stadler
SOFTWARE:
Noisy-1.5.7
Accession Numbers of the sequences used in this study.
Arthropoda.fas: Clustal X alignment of the nucleotide sequences of
arthropods mitochondrial protein coding genes
Arthropoda_out.fas:Output file of the program noisy
with cutoff 0.8 - nucleotide sequences of arthropods mitochondrial protein coding genes
Arthropoda_sta.gr: Statistics of the alignment and the output
of the program noisy - nucleotide sequences of arthropods mitochondrial protein coding genes
Arthropoda_typ.eps: Graphic of the distribution of homoplastic
sites for arthropods example
Squamata.fas: Clustal X alignment of the nucleotide sequences of
Squamata mitochondrial protein coding genes
Squamata_out.fas:Output file of the program noisy
with cutoff 0.8 - nucleotide sequences of Squamata mitochondrial protein coding genes
Squamata_sta.gr: Statistics of the alignment and the output
of the program noisy - nucleotide sequences of Squamata mitochondrial protein coding genes
Squamata_typ.eps: Graphic of the distribution of homoplastic
sites for Squamata example
Frogs.fas: Clustal X alignment of the part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
Frogs_out.fas:Output file of the program noisy
with cutoff 0.8 - part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
Frogs_sta.gr: Statistics of the alignment and the output
of the program noisy - part of nucleotide sequences (12Sr RNA to 16Sr RNA) of frogs
Frogs_typ.eps: Graphic of the distribution of homoplastic
sites for frogs example