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BIOINF 04-006: The Duplication of the Hox Gene Clusters in Teleost Fishes

Sonja J. Prohaska, Peter F. Stadler

Supplemental Material

  • Homeobox fragments from the PCR survey of the killifish Fundulus heteroclitus from Misof B.Y. and Wagner G.P, Mol.Phylog.Evol 5, 309-322 (1996).
  • Identification of Hox Genes
  • Hox gene clusters of Tetraodon nigroviridis
    The composition of the clusters from individual contigs is listed in the fasta header of the sequence files.
     
    Sequence HoxAa HoxAb HoxBa HoxBb HoxCa HoxDa HoxDb
    Exons HoxAa HoxAb HoxBa HoxBb HoxCa HoxDa HoxDb
     
    • The exonfile lists the direction ('>' or '<') and boundary positions of the conding regions for all Hox genes.
    Blast hits from known Hox genes are included as comments.
     
  • Hox gene clusters of Takifugu rubripes
    The composition of the clusters from individual contigs is listed in the fasta header of the sequence files.
     
    Sequence HoxAa HoxAb HoxBa HoxBb HoxCa HoxDa HoxDb
    Exons HoxAa HoxAb HoxBa HoxBb HoxCa HoxDa HoxDb
     
  • Summary of phylogenetic footprint cliques from tracker runs.
     
    Cluster HoxA HoxB HoxC HoxD
     
    •