Publications - Supplemental material
Please find below supplemental material corresponding to publications of our group. Currently, we list 133 supplements.
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BIOINF 09-010: Evolution of 7SK RNA and Its Protein Partners in Metazoa
Manja Marz*, Alexander Donath*, Nina Verstraete, Van Trung Nguyen, Peter F. Stadler, Olivier Bensaude
For any questions please contact manja@bioinf.uni-leipzig.de
Nematoda HEXIM PSSM
the input sequence
Nematoda HEXIM sequences from the NCBI EST database:
ESTs
Overview of used genomes and their source:
For any questions please contact manja@bioinf.uni-leipzig.de
A new secondary structure model
Alignments
| Organisms | Fasta | Alignment |
| All Metazoans | 7sk | 7sk.stk |
| Add-Ons | adds-7sk | adds-7sk.stk |
| Deuterostomes | Hexim | Hexim ClustalW aln | Hexim MUSCLE aln |
| Protostomes | Hexim | Hexim ClustalW aln | Hexim MUSCLE aln |
| Nematodes | Hexim | Hexim ClustalW aln | Hexim MUSCLE aln |
| All Metazoans | Hexim | Hexim ClustalW aln | Hexim MUSCLE aln |
| All Metazoans | MePCE ClustalW aln | MePCE MUSCLE aln | |
| All Metazoans | Larp7 ClustalW aln | Larp7 MUSCLE aln |
SplitsTree image of HEXIM sequence alignment
SplitsTree image of Caenorhabditis 7SK sequence alignment
Other data
Files for local PSI-tblastn search in Nematoda:Nematoda HEXIM PSSM
the input sequence
Nematoda HEXIM sequences from the NCBI EST database:
ESTs
Overview of used genomes and their source: