Publications - Supplemental material

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BIOINF 07-015: <tt>SnoReport</tt>: Computational identification of snoRNAs with unknown targets

Jana Hertel, Ivo L. Hofacker, Peter F. Stadler

The Source code of the program can be downloaded here:
Software

The following files contain the sequences that were used for training and testing the single sequence SVM models (in FASTA format:)
CD_single.fa
non-CD_single.fa 		HACA_single.fa
non-HACA_single.fa

Position specific weight matrices of the characteristic box motifs:

H box → Download
1.000000, 0.250000, 1.000000, 0.250000, 0.250000, 1.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000 		Hbox
C box → Download
0.743191, 0.000000, 0.011673, 0.992218, 0.035019, 0.003891, 0.840467
0.035019, 0.003891, 0.007782, 0.000000, 0.000000, 0.000000, 0.007782
0.217899, 0.042802, 0.976654, 0.003891, 0.007782, 0.988327, 0.054475
0.003891, 0.953307, 0.003891, 0.003891, 0.957198, 0.007782, 0.097276
0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000 		Hbox
D box → Download
0.007782, 0.000000, 0.000000, 1.000000
0.988327, 0.000000, 0.011673, 0.000000
0.003891, 0.000000, 0.988327, 0.000000
0.000000, 1.000000, 0.000000, 0.000000
0.000000, 0.000000, 0.000000, 0.000000
 		Hbox