Publications - Published papers
Please find below publications of our group. Currently, we list 565 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (
) is restricted to our local network and chosen collaborators.
If you have problems accessing electronic information, please let us know:
) is restricted to our local network and chosen collaborators.
If you have problems accessing electronic information, please let us know:©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.
<tt>CREx</tt>: Inferring Genomic Rearrangements Based on Common Intervals
Matthias Bernt, Daniel Merkle, Kai Ramsch, Guido Fritzsch, Marleen Perseke, Detlef Bernhard, Martin Schlegel, Peter Stadler, Martin Middendorf
Download
Status: Published
Bioinformatics. 2007 Nov 1;23(21):2957-2958. Epub 2007 Sep 25.
Abstract
<b>Summary:</b><br/>
We present the web-based program CREx for heuristically
determining pairwise rearrangement events in unichromosomal
genomes. CREx considers transpositions, reverse transpositions,
reversals, and tandem-duplication-random-loss (TDRL) events. It
supports the user in finding parsimonious rearrangement scenarios
given a phylogenetic hypothesis. CREx is based on common intervals,
which reflect genes that appear consecutively in several of the input
gene orders.<br/>
<b>Availability:</b><br/>
CREx is freely available at http://pacosy.informatik.unileipzig.de/crex