Correlation of cytosine methylation and genome size

• Metazoa genome size, mC/C, mC/CG plot [PNG]
• Metazoa genome size, mC/C, mC/CG data [TSV]

Correlation of GC content and CG depletion / eta_CG

• GC content and CG depletion / eta_CG plot [PNG]
• GC content and CG depletion / eta_CG data [TSV]

Independent Contrasts analysis

• IDs of the underlying ssu ribosomal sequences [TXT] (taken from http://www.arb-silva.de/)
• Resulting alignment (trimmed to 50%+ sites only) [FASTA]
• Genomes: eta and sizes with approximated branch lengths (by PhyML, HKY85 model) [NEXUS] (Mesquite with PDAP Plugin required!)

Genome Databases

• Genome database sources and versions used in this analysis [HTML]

Figure 1

• Metazoa genome size, eta [TSV]

Figure 2

• Distributions of components of the DNA methylation apparatus [NEXUS]
• Genomes: eta and sizes [NEXUS]

Figure 3

• eta: Transposable elements, genome [TSV]

Figure 4

• a)
  • eta: Transposable elements vs. genome by age [TSV]
• b)
  • eta_CNG: Transposable elements vs. genome by age [TSV]
  • eta_CNG: genomes [TSV]

Figure 5

• a)
  • eta: ESTs and genomes [TSV]
• b)
  • eta: ncRNAs and genomes [TSV]

Figure 6

• eta: 5'- and 3'UTRs [TSV]

Figure 7

• Genome size and cytosine methylation rate in orthopterans [TSV]