bbq Implementation Documentation

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Here is a list of all class members with links to the classes they belong to:

- a -

• arrangement : bbq::weighted_footprint_detector< w_bit_set >
• arrangement_range : bbq::weighted_footprint_detector< w_bit_set >

- b -

• bit_multi_set() : bbq::bit_multi_set
• bits : bbq::weighted_variable_bitset
• bound() : bbq::weighted_footprint_detector< w_bit_set >

- c -

• c_uint : bbq::bit_multi_set, bbq::weighted_bit_multi_set
• cardinality() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• cell_set : bbq::weighted_footprint_detector< w_bit_set >
• clear() : bbq::weighted_footprint_detector< w_bit_set >
• compute_h_best_intersections() : bbq::weighted_footprint_detector< w_bit_set >
• compute_index_table() : bbq::weighted_footprint_detector< w_bit_set >
• compute_intersections() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• contains() : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• counts : bbq::bit_multi_set, bbq::weighted_bit_multi_set

- d -

• decrease() : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• difference() : bbq::weighted_footprint_detector< w_bit_set >
• differs() : bbq::weighted_footprint_detector< w_bit_set >

- e -

• enum_h_best_sets() : bbq::weighted_footprint_detector< w_bit_set >
• enum_h_best_w_sets() : bbq::weighted_footprint_detector< w_bit_set >
• enum_sets() : bbq::weighted_footprint_detector< w_bit_set >
• enum_w_sets() : bbq::weighted_footprint_detector< w_bit_set >
• enumerate_differences() : bbq::weighted_footprint_detector< w_bit_set >
• enumerate_h_best_subsets() : bbq::weighted_footprint_detector< w_bit_set >
• enumerate_subsets() : bbq::weighted_footprint_detector< w_bit_set >

- f -

• first : std::triple< _T1, _T2, _T3 >
• first_type : std::triple< _T1, _T2, _T3 >
• footprint_detector() : bbq::footprint_detector

- g -

• get_element_array() : bbq::weighted_footprint_detector< w_bit_set >
• get_frag_occurences() : bbq::weighted_footprint_detector< w_bit_set >
• get_freq() : bbq::weighted_footprint_detector< w_bit_set >
• get_group_occurences() : bbq::weighted_footprint_detector< w_bit_set >
• get_groups() : bbq::weighted_footprint_detector< w_bit_set >
• get_occurences() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• get_result() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• get_weight() : bbq::weighted_footprint_detector< w_bit_set >

- h -

• h_best_w_bound() : bbq::weighted_footprint_detector< w_bit_set >

- i -

• increase() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• init_arrangement_cells() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• intersect() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• intersection_cardinality() : bbq::footprint_detector

- k -

• k : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• k_ : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset

- o -

• operator<() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• operator<< : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• operator=() : bbq::bit_multi_set, bbq::variable_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• operator==() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset

- p -

• p_value() : bbq::weighted_footprint_detector< w_bit_set >
• print_h_results() : bbq::weighted_footprint_detector< w_bit_set >
• print_postscript() : bbq::weighted_footprint_detector< w_bit_set >
• print_ps_h_results() : bbq::weighted_footprint_detector< w_bit_set >
• print_ps_labels() : bbq::weighted_footprint_detector< w_bit_set >
• print_ps_single_result() : bbq::weighted_footprint_detector< w_bit_set >
• print_result() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >
• print_single_result() : bbq::weighted_footprint_detector< w_bit_set >
• print_with_names() : bbq::weighted_footprint_detector< w_bit_set >

- r -

• remove() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• reset() : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• reverse_compl() : bbq::weighted_footprint_detector< w_bit_set >
• run() : bbq::footprint_detector, bbq::weighted_footprint_detector< w_bit_set >

- s -

• second : std::triple< _T1, _T2, _T3 >
• second_type : std::triple< _T1, _T2, _T3 >
• set() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• set_algorithm() : bbq::weighted_footprint_detector< w_bit_set >
• set_count_results() : bbq::weighted_footprint_detector< w_bit_set >
• set_delta() : bbq::weighted_footprint_detector< w_bit_set >
• set_group_characters() : bbq::weighted_footprint_detector< w_bit_set >
• set_grouping() : bbq::weighted_footprint_detector< w_bit_set >
• set_number_of_hits() : bbq::weighted_footprint_detector< w_bit_set >
• set_output_detail() : bbq::weighted_footprint_detector< w_bit_set >
• set_postscript() : bbq::weighted_footprint_detector< w_bit_set >
• set_progress_report() : bbq::weighted_footprint_detector< w_bit_set >
• set_ps_filename() : bbq::weighted_footprint_detector< w_bit_set >
• set_reverse() : bbq::weighted_footprint_detector< w_bit_set >
• set_weight_type() : bbq::weighted_footprint_detector< w_bit_set >
• set_weighted() : bbq::weighted_footprint_detector< w_bit_set >
• subseteq() : bbq::bit_multi_set, bbq::variable_bitset, bbq::uint64_bitset, bbq::uint_bitset, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset

- t -

• test_diff_set() : bbq::weighted_footprint_detector< w_bit_set >
• third : std::triple< _T1, _T2, _T3 >
• third_type : std::triple< _T1, _T2, _T3 >
• triple() : std::triple< _T1, _T2, _T3 >

- u -

• uint64_bitset() : bbq::uint64_bitset
• uint_bitset() : bbq::uint_bitset
• update_h_best_list() : bbq::weighted_footprint_detector< w_bit_set >

- v -

• variable_bitset() : bbq::variable_bitset

- w -

• w_bound() : bbq::weighted_footprint_detector< w_bit_set >
• weight() : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• weighted : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset
• weighted_bit_multi_set() : bbq::weighted_bit_multi_set
• weighted_footprint_detector() : bbq::weighted_footprint_detector< w_bit_set >
• weighted_variable_bitset() : bbq::weighted_variable_bitset
• weights : bbq::bit_multi_set, bbq::weighted_bit_multi_set, bbq::weighted_variable_bitset

- ~ -

• ~bit_multi_set() : bbq::bit_multi_set
• ~footprint_detector() : bbq::footprint_detector
• ~variable_bitset() : bbq::variable_bitset
• ~weighted_bit_multi_set() : bbq::weighted_bit_multi_set
• ~weighted_footprint_detector() : bbq::weighted_footprint_detector< w_bit_set >
• ~weighted_variable_bitset() : bbq::weighted_variable_bitset

bbq Implementation Documentation
Axel Mosig, Bioinformatics, University of Leipzig