HOXB9_ENSG00000170689_2e5.protein.info Alignment Results

Overview on processed synteny regions for HOXB9_ENSG00000170689_2e5.protein.info

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	6201	14.16	3.13	5.09	Danio_rerio	3	23033313	23036568	2	100%	72.7%	1	341.36	ortholog_one2one: hoxb9a
2	3008	6.66	-1.66	2.54	Danio_rerio	23	33742961	33744781	2	73.6%	64.9%	1	226.26	noComparaHits: hoxc9a
3	2982	6.64	-1.69	2.54	Danio_rerio	23	35245651	35247471	2	73.6%	64.9%	-1	226.26	noComparaHits: hoxc9a
4	2702	6.01	-1.14	1.94	Danio_rerio	19	10511297	10512336	2	86.8%	51.4%	1	187.53	noComparaHits: hoxa9a
5	1678	3.55	-0.48	1.65	Danio_rerio	9	1948809	1949904	2	100%	45.9%	-1	230.84	noComparaHits: hoxd9a
6	1647	3.47	0.42	0.88	Danio_rerio	12
7	1342	3	-0.01	1.59	Danio_rerio	16	15965005	15966531	2	100%	49%	-1	203.37	noComparaHits: hoxa9b
8	1003	2.44	-0.64	1.32	Danio_rerio	11	566902	568398	2	44%	46.4%	1	107.27	noComparaHits: hoxc11b

Data table for reference protein loci

QueryProtein(s)=ENSP00000309439 (contained in p10)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	HOXB1	ENSP00000355140	ENST00000239174	ENSG00000120094	HXB1_HUMAN	17	43961908	43963265	43962807	-1	2	301	587.08
p2	HOXB2	ENSP00000331741	ENST00000330070	ENSG00000173917	HXB2_HUMAN	17	43975429	43977272	43975960	-1	2	356	640.94
p3	HOXB3	ENSP00000308252	ENST00000311626	ENSG00000120093	HXB3_HUMAN	17	43982695	43984835	43983337	-1	2	431	769.07
p4	HOXB4	ENSP00000328928	ENST00000332503	ENSG00000182742	HXB4_HUMAN	17	44009083	44010680	44010297	-1	2	251	455.42
p5	HOXB5	ENSP00000239151	ENST00000239151	ENSG00000120075	HXB5_HUMAN	17	44024570	44026043	44025633	-1	2	269	503.29
p6	HOXB6	ENSP00000225648	ENST00000225648	ENSG00000108511	HXB6_HUMAN	17	44028774	44030511	44030170	-1	2	224	439.23
p7	-	ENSP00000365889	ENST00000376699	ENSG00000204609	-	17	44034852	44038674	44038504	1	3	109	199.5
p8	HOXB7	ENSP00000239165	ENST00000239165	ENSG00000120087	HXB7_HUMAN	17	44040203	44043279	44042947	-1	2	217	404.02
p9	HOXB8	ENSP00000239144	ENST00000239144	ENSG00000120068	HXB8_HUMAN	17	44045563	44047065	44046694	-1	2	243	471.62
p10	HOXB9	ENSP00000309439	ENST00000311177	ENSG00000170689	HXB9_HUMAN	17	44055261	44058630	44058250	-1	2	250	478.31
p11	HOXB13	ENSP00000290295	ENST00000290295	ENSG00000159184	HXB13_HUMAN	17	44159151	44160954	44160523	-1	2	284	558.91
p12	TTLL6	ENSP00000302547	ENST00000305326	ENSG00000170703	NP_775894.1	17	44201350	44226596	44217497	-1	8	569	1082.44
p13	Q658K6_HUMAN	ENSP00000365871	ENST00000376681	ENSG00000204606	Q658K6_HUMAN	17	44236656	44249439	44237177	-1	3	185	298.78

total length of ref-loci (on slice) = 287532 (29e4)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:

<=
33

<=
66

<=
100

<=
133

<=
166

<=
200

<=
233

<=
266

<=
300

<=
333

<=
366

<=
400

<=
433

<=
466

<=
500

<=
533

<=
566

<=
600

<=
633

<=
666

<=
700

<=
733

<=
766

<=
800

<=
833

<=
866

<=
900

<=
933

<=
966

<=
1000

relSc>1000

<=
33

<=
66

<=
100

<=
133

<=
166

<=
200

<=
233

<=
266

<=
300

<=
333

<=
366

<=
400

<=
433

<=
466

<=
500

<=
533

<=
566

<=
600

<=
633

<=
666

<=
700

<=
733

<=
766

<=
800

<=
833

<=
866

<=
900

<=
933

<=
966

<=
1000

relSc>1000

region 1

syntenyRegion: Danio_rerio.glob01.3.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 22698860:23270974 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=14.16 log_scoreRatio_sum=3.13 focal_scoreRatio_sum=5.09
AlnScore=6201 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	208.66	3	23124674	23126266	1	2	90.4%	48.6%	852	0.69 / 0.64 = 1.08	noComparaHits: hoxb1a	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	265.34	3	23107926	23109567	1	2	67.4%	64.8%	759	0.51 / 0.58 = 0.88	ortholog_one2one: hoxb2a	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	535.68	3	23101788	23103710	1	2	94.9%	69.3%	1242	0.45 / 0.3 = 1.5	ortholog_one2one: hoxb3a	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	291.38	3	23077620	23079249	1	2	96%	64.2%	696	0.43 / 0.36 = 1.19	ortholog_one2one: hoxb4a	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	380.79	3	23063599	23065038	1	2	100%	74.2%	858	0.4 / 0.24 = 1.67	ortholog_one2many: hoxb5a	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	298.42	3	23059516	23061253	1	2	100%	69.3%	687	0.46 / 0.32 = 1.44	ortholog_one2one: hoxb6a	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	238.22	3	23047659	23051564	1	2	100%	58.8%	681	0.41 / 0.41 = 1	ortholog_one2many: hoxb7a	1
p9	q8	+/+	ENSP00000239144	HOXB8	q8	q8	377.98	3	23044100	23045578	1	2	99.2%	78.9%	723	0.4 / 0.19 = 2.11	ortholog_one2many: hoxb8a	1
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	341.36	3	23033313	23036568	1	2	100%	72.7%	759	0.52 / 0.28 = 1.86	ortholog_one2one: hoxb9a	1
---	q10	gapp	-	-	-	q10	-	-	-	-	-	-	-	-	-	-	-	-
p11	q11	+/+	ENSP00000290295	HOXB13	q11	q11	319.89	3	23010205	23011476	1	2	94.7%	63.2%	828	0.6 / 0.42 = 1.43	ortholog_one2one: hoxb13a	1
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 2

syntenyRegion: Danio_rerio.glob06.23.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 33339417:33907039 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=6.66 log_scoreRatio_sum=-1.66 focal_scoreRatio_sum=2.54
AlnScore=3008 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	101.51	23	33830820	33831086	1	1	30.6%	62.1%	267	0.69 / 0.82 = 0.84	noComparaHits: hoxc1a	4
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	123.46	23	33791828	33795648	1	2	29.9%	53.8%	387	0.45 / 0.83 = 0.54	noComparaHits: hoxc3a	4
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	235.41	23	33778655	33779867	1	2	95.2%	56.4%	693	0.43 / 0.48 = 0.9	between_species_paralog: hoxc4a	2
p5	q4	+/+	ENSP00000239151	HOXB5	q4	q4	157.26	23	33766345	33767831	1	2	85.5%	42.7%	690	0.4 / 0.68 = 0.59	noComparaHits: hoxc5a	4
p6	q5	+/+	ENSP00000225648	HOXB6	q5	q5	173.1	23	33763064	33764345	1	2	100%	46.4%	672	0.46 / 0.6 = 0.77	noComparaHits: hoxc6a	4
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q6	+/+	ENSP00000239144	HOXB8	q6	q6	280.82	23	33749039	33751023	1	2	99.2%	61.2%	717	0.4 / 0.4 = 1	between_species_paralog: hoxc8a	3
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	226.26	23	33742961	33744781	1	2	73.6%	64.9%	546	0.52 / 0.52 = 1	noComparaHits: hoxc9a	3
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p11	q9	+/+	ENSP00000290295	HOXB13	q9	q9	225.2	23	33701619	33704203	1	2	92.6%	48.5%	795	0.6 / 0.59 = 1.02	noComparaHits: hoxc13a	4
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 3

syntenyRegion: Danio_rerio.glob05.23.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 35106315:35678424 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=6.64 log_scoreRatio_sum=-1.69 focal_scoreRatio_sum=2.54
AlnScore=2982 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	q2	+/+	ENSP00000355140	HOXB1	q1,q2	q2	101.51	23	35159191	35159457	-1	1	30.6%	62.1%	267	0.69 / 0.82 = 0.84	noComparaHits: hoxc1a	4
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	103.62	23	35194743	35195060	-1	1	24.6%	56.9%	318	0.45 / 0.86 = 0.52	noComparaHits: hoxc3a	5
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	235.41	23	35210616	35211828	-1	2	95.2%	56.4%	693	0.43 / 0.48 = 0.9	between_species_paralog: hoxc4a	2
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	157.26	23	35222644	35224130	-1	2	85.5%	42.7%	690	0.4 / 0.68 = 0.59	noComparaHits: hoxc5a	4
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	173.1	23	35226130	35227411	-1	2	100%	46.4%	672	0.46 / 0.6 = 0.77	noComparaHits: hoxc6a	4
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q7	+/+	ENSP00000239144	HOXB8	q7	q7	280.82	23	35239409	35241393	-1	2	99.2%	61.2%	717	0.4 / 0.4 = 1	between_species_paralog: hoxc8a	3
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	226.26	23	35245651	35247471	-1	2	73.6%	64.9%	546	0.52 / 0.52 = 1	noComparaHits: hoxc9a	3
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p11	q10	+/+	ENSP00000290295	HOXB13	q10	q10	225.2	23	35287163	35289747	-1	2	92.6%	48.5%	795	0.6 / 0.59 = 1.02	noComparaHits: hoxc13a	4
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 4

syntenyRegion: Danio_rerio.glob02.19.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 10048565:10606208 -f 42e4 some_geneID_to_be_selected
scoreRatio_sum=6.01 log_scoreRatio_sum=-1.14 focal_scoreRatio_sum=1.94
AlnScore=2702 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	159.02	19	10547407	10548486	1	2	92%	40.3%	888	0.69 / 0.72 = 0.96	noComparaHits: hoxa1a	3
p2	q2	+/+	ENSP00000331741	HOXB2	q3	q2	117.48	19	10543546	10544456	1	2	45.5%	51.2%	447	0.51 / 0.81 = 0.63	noComparaHits:	6
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	348.76	19	10538806	10540642	1	2	92.8%	52.5%	1206	0.45 / 0.54 = 0.83	between_species_paralog: hoxa3a	3
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	205.84	19	10528752	10529876	1	2	94%	52.3%	678	0.43 / 0.54 = 0.8	between_species_paralog: hoxa4a	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	260.76	19	10520701	10522002	1	2	100%	55.1%	801	0.4 / 0.48 = 0.83	between_species_paralog: hoxa5a	3
p6	---	gapq	ENSP00000225648	HOXB6	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	187.53	19	10511297	10512336	1	2	86.8%	51.4%	630	0.52 / 0.6 = 0.87	noComparaHits: hoxa9a	5
p11	q7	+/+	ENSP00000290295	HOXB13	q7	q7	247.73	19	10490805	10491773	1	2	92.6%	51.3%	822	0.6 / 0.55 = 1.09	between_species_paralog: hoxa13a	3
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 5

syntenyRegion: Danio_rerio.glob03.9.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1918429:2457471 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=3.55 log_scoreRatio_sum=-0.48 focal_scoreRatio_sum=1.65
AlnScore=1678 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	366.71	9	1921957	1923358	-1	2	94%	53.9%	1182	0.45 / 0.52 = 0.87	between_species_paralog: hoxd3a	2
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	224.85	9	1933951	1934984	-1	2	91.6%	55.8%	645	0.43 / 0.5 = 0.86	between_species_paralog: hoxd4a	3
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	230.84	9	1948809	1949904	-1	2	100%	45.9%	852	0.52 / 0.51 = 1.02	noComparaHits: hoxd9a	2
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p11	q5	+/+	ENSP00000290295	HOXB13	q5	q5	138.6	9	1971944	1974424	-1	2	74.6%	39.8%	636	0.6 / 0.75 = 0.8	noComparaHits: hoxd13a	6
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6

syntenyRegion: Danio_rerio.glob04.12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 26050802:26588724 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=3.47 log_scoreRatio_sum=0.42 focal_scoreRatio_sum=0.88
AlnScore=1647 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	192.81	12	26456229	26457229	-1	2	98.3%	41.7%	924	0.69 / 0.67 = 1.03	noComparaHits: hoxb1b	2
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	350.17	12	26467712	26468987	-1	2	99.6%	69.5%	825	0.4 / 0.3 = 1.33	ortholog_one2many: hoxb5b	2
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q3	+/+	ENSP00000239144	HOXB8	q3	q3	300.18	12	26478779	26480927	-1	2	93%	66.4%	714	0.4 / 0.36 = 1.11	ortholog_one2many: hoxb8b	2
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000302547	TTLL6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7

syntenyRegion: Danio_rerio.glob07.16.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 15847888:16414264 -f 42e4 some_geneID_to_be_selected
scoreRatio_sum=3 log_scoreRatio_sum=-0.01 focal_scoreRatio_sum=1.59
AlnScore=1342 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	292.56	16	15953173	15954846	-1	3	70.8%	64.7%	744	0.51 / 0.54 = 0.94	between_species_paralog: hoxa2b	1
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	203.37	16	15965005	15966531	-1	2	100%	49%	735	0.52 / 0.57 = 0.91	noComparaHits: hoxa9b	4
p11	q3	+/+	ENSP00000290295	HOXB13	q3	q3	265.68	16	15984775	15985947	-1	2	91.5%	54.4%	762	0.6 / 0.52 = 1.15	between_species_paralog: hoxa13b	2
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8

syntenyRegion: Danio_rerio.glob08.11.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 44446:590840 -f 41e4 some_geneID_to_be_selected
scoreRatio_sum=2.44 log_scoreRatio_sum=-0.64 focal_scoreRatio_sum=1.32
AlnScore=1003 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	181.2	11	589745	590771	1	2	93.3%	49.5%	612	0.46 / 0.58 = 0.79	noComparaHits: hoxc6b	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	107.27	11	566902	568398	1	2	44%	46.4%	327	0.52 / 0.77 = 0.68	noComparaHits: hoxc11b	8
p11	q3	+/+	ENSP00000290295	HOXB13	q3	q3	209.01	11	547360	549825	1	2	95.4%	46.6%	816	0.6 / 0.62 = 0.97	noComparaHits: hoxc13b	5
p12	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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