Locus 479

Sequence ID 3L_DroMel_CAF1
Location 1,352,653 – 1,352,743
Length 90
Max. P 0.849447
window709

overview

Window 9

Location 1,352,653 – 1,352,743
Length 90
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 75.15
Mean single sequence MFE -19.33
Consensus MFE -9.80
Energy contribution -10.13
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.51
SVM decision value 0.78
SVM RNA-class probability 0.849447
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1352653 90 + 23771897
CGAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUGUGGAAGAAACUUUAAUCUU------------------------AGUUUUAGUUAUUUUAUAGUAACUAGCUUGCAUUUA
((((((......(((((((((.((....))))))))))).((((((........------------------------))))))(((((((....)))))))))))))...... ( -19.70)
>DroSec_CAF1 8149 110 + 1
CAAGCUACCUUCUUCAUAUUAACUAUCCAGUAAUUUGGAUGAAACUCCCAUCUUAAAGUAAUUAGUUUUAGUUAGUAUAAUUUUAGUUAUAUCAUAGUAACUAG----CACCUA
...((..........(((((((((((((((....))))))((((((.....(.....).....))))))))))))))).....(((((((......))))))))----)..... ( -20.90)
>DroSim_CAF1 6101 110 + 1
CAAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUUAGGAAGAAACUCCCAUCUUAAAGUAAUUAGUUAUAGUUAUUAUAAUUUUAGUUAUAUCAUAGUAACUAG----CACUUA
...((..........(((.((((((((((((.(((...((((........))))..))).)))))..))))))).))).....(((((((......))))))))----)..... ( -17.40)
>consensus
CAAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUUUGGAAGAAACUCCCAUCUUAAAGUAAUUAGUU_UAGUUA_UAUAAUUUUAGUUAUAUCAUAGUAACUAG____CACUUA
.........((((((..((((.((....))))))...))))))........................................(((((((......)))))))........... ( -9.80 = -10.13 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:58 2006