LOOPP parallel driver v3.1 [ALI] (08/24/04 12:18 EST) with LOOPP v3.0 (compiled Sep 20 2004 17:13:12)
[HSHFL] [NEWDB] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Mon Oct 11 07:20:45 2004 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 20 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 20 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 10011111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 1 stop if PDB structure with similarity above pdbcut found
domains = 1 query sequence will be decomposed into putative domains if =1
maxall = 50 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
local LOOPP/BLAST database will be used
input file t0227
--> 121 residues, sequence name: t0227
Database: T:\CBSU\blastdb\20040731\nr
-> 5 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | |
1 | 0.00 | 17.55 | 15.37 | 16.32 | 16.55 | 14.26 | 17.47 | 16.32 | 17.69 | 18.16 | 18.86 | 15.47 | 15.62 | 16.85 | 19.33 | 18.41 | 14.08 | 13.40 | 23.30 | 15.49 |
2 | 17.55 | 0.00 | 15.90 | 12.95 | 15.74 | 15.92 | 18.82 | 15.31 | 14.20 | 15.01 | 16.29 | 7.45 | 13.31 | 16.31 | 19.06 | 17.27 | 14.76 | 14.11 | 19.74 | 16.46 |
3 | 15.37 | 15.90 | 0.00 | 12.93 | 16.39 | 16.19 | 16.53 | 13.98 | 13.69 | 15.26 | 16.20 | 14.13 | 13.38 | 14.58 | 15.99 | 15.42 | 10.58 | 8.01 | 19.94 | 14.42 |
4 | 16.32 | 12.95 | 12.93 | 0.00 | 12.12 | 16.75 | 19.80 | 14.85 | 14.96 | 18.47 | 14.75 | 11.77 | 13.60 | 17.02 | 17.41 | 19.12 | 15.23 | 16.73 | 20.71 | 16.23 |
5 | 16.55 | 15.74 | 16.39 | 12.12 | 0.00 | 17.16 | 18.10 | 16.09 | 16.28 | 19.93 | 15.73 | 15.07 | 14.33 | 14.85 | 17.52 | 17.54 | 12.84 | 15.35 | 21.22 | 16.80 |
6 | 14.26 | 15.92 | 16.19 | 16.75 | 17.16 | 0.00 | 16.02 | 13.34 | 16.71 | 17.04 | 18.24 | 14.98 | 13.44 | 17.87 | 16.07 | 18.68 | 15.22 | 14.69 | 23.44 | 17.42 |
7 | 17.47 | 18.82 | 16.53 | 19.80 | 18.10 | 16.02 | 0.00 | 15.81 | 14.84 | 15.75 | 17.18 | 18.14 | 13.01 | 18.16 | 16.19 | 17.38 | 16.95 | 16.43 | 23.46 | 16.79 |
8 | 16.32 | 15.31 | 13.98 | 14.85 | 16.09 | 13.34 | 15.81 | 0.00 | 15.04 | 14.81 | 14.88 | 12.94 | 14.23 | 16.47 | 16.43 | 17.60 | 14.87 | 13.06 | 22.43 | 12.28 |
9 | 17.69 | 14.20 | 13.69 | 14.96 | 16.28 | 16.71 | 14.84 | 15.04 | 0.00 | 16.90 | 17.35 | 14.47 | 12.96 | 13.29 | 15.86 | 16.87 | 15.23 | 15.33 | 23.19 | 17.42 |
10 | 18.16 | 15.01 | 15.26 | 18.47 | 19.93 | 17.04 | 15.75 | 14.81 | 16.90 | 0.00 | 18.51 | 15.32 | 16.94 | 15.91 | 17.39 | 18.59 | 15.17 | 14.09 | 22.39 | 17.74 |
11 | 18.86 | 16.29 | 16.20 | 14.75 | 15.73 | 18.24 | 17.18 | 14.88 | 17.35 | 18.51 | 0.00 | 14.82 | 15.76 | 14.02 | 15.23 | 11.71 | 13.17 | 14.99 | 18.63 | 12.74 |
12 | 15.47 | 7.45 | 14.13 | 11.77 | 15.07 | 14.98 | 18.14 | 12.94 | 14.47 | 15.32 | 14.82 | 0.00 | 11.95 | 14.23 | 18.42 | 15.58 | 13.50 | 13.31 | 21.50 | 13.70 |
13 | 15.62 | 13.31 | 13.38 | 13.60 | 14.33 | 13.44 | 13.01 | 14.23 | 12.96 | 16.94 | 15.76 | 11.95 | 0.00 | 15.67 | 15.03 | 15.82 | 12.27 | 12.77 | 22.84 | 16.12 |
14 | 16.85 | 16.31 | 14.58 | 17.02 | 14.85 | 17.87 | 18.16 | 16.47 | 13.29 | 15.91 | 14.02 | 14.23 | 15.67 | 0.00 | 17.24 | 17.53 | 15.48 | 14.83 | 20.79 | 10.97 |
15 | 19.33 | 19.06 | 15.99 | 17.41 | 17.52 | 16.07 | 16.19 | 16.43 | 15.86 | 17.39 | 15.23 | 18.42 | 15.03 | 17.24 | 0.00 | 16.22 | 13.21 | 14.39 | 18.24 | 16.55 |
16 | 18.41 | 17.27 | 15.42 | 19.12 | 17.54 | 18.68 | 17.38 | 17.60 | 16.87 | 18.59 | 11.71 | 15.58 | 15.82 | 17.53 | 16.22 | 0.00 | 16.28 | 17.43 | 23.53 | 16.36 |
17 | 14.08 | 14.76 | 10.58 | 15.23 | 12.84 | 15.22 | 16.95 | 14.87 | 15.23 | 15.17 | 13.17 | 13.50 | 12.27 | 15.48 | 13.21 | 16.28 | 0.00 | 8.63 | 18.85 | 14.90 |
18 | 13.40 | 14.11 | 8.01 | 16.73 | 15.35 | 14.69 | 16.43 | 13.06 | 15.33 | 14.09 | 14.99 | 13.31 | 12.77 | 14.83 | 14.39 | 17.43 | 8.63 | 0.00 | 18.57 | 14.26 |
19 | 23.30 | 19.74 | 19.94 | 20.71 | 21.22 | 23.44 | 23.46 | 22.43 | 23.19 | 22.39 | 18.63 | 21.50 | 22.84 | 20.79 | 18.24 | 23.53 | 18.85 | 18.57 | 0.00 | 21.39 |
20 | 15.49 | 16.46 | 14.42 | 16.23 | 16.80 | 17.42 | 16.79 | 12.28 | 17.42 | 17.74 | 12.74 | 13.70 | 16.12 | 10.97 | 16.55 | 16.36 | 14.90 | 14.26 | 21.39 | 0.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 28.70% helical, 16.52% extended, 54.78% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Dihydrofolate reductases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1VDR_A c.71.1.1 6.2.2.2 NONE 0.791 0 1 93.39% 9.92% OPTM -18.495 -145.650 -18.000 1.710 0.910 7.000 7.5 2.100 16.500 -93.5 0.130 4.180 92.0 0.650 3.300 -19.2 1.740 10.230 42.7 2.860 -1.230 -28.9 -30.000 19.000 -53.0 -30.000 6.000 -71.0 0.800 12.000 74.0 8.500 44.000 -90.0 1.240 9.000 7.0 3.440 5.000 -51.0 0.23 0.56
alignment source: OPTM
-----EEEEE---HHHHHH----EEEEEE--------EEEEE-- -E--EEEEEEE-----HHHHHHHHHHH--H
Query: 1 MERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGG--RLIGQADLVGVEGPFSVEELLAHQEKHLAE---- 74
Sbjct: 38 ADDP---VVLGRTTFESMRD------------DLPGSAQIVMSRSERSFSVDTAHRAAS---VEEAVDIAASLDAETAYV 99
---E EEEHHHHHH---- -----EEEE-------------EE--H HHHHHHHHH-----EEEE
HHHHHHHH-- ---EEEEE----------EEE----EEEEEE------
Query: 75 ---EAFLRAYAKD-EPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVRW 121
Sbjct: 100 IGGAAIYALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAETDHEGF 150
E-HHHHHHH-----EEEEEEEEEE----EE--------EEEEEEEE----E
113 residues (93.39%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 15.75% helical, 40.16% extended, 44.09% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1F9Z_A d.32.1.1 15.1.1.1 NONE 0.762 0 1 97.52% 13.56% OPTM -76.171 -188.890 -19.240 -0.840 -0.730 -30.500 1.0 -0.720 -23.500 -53.0 0.500 4.930 -1.2 -0.240 0.910 -19.2 6.030 25.210 -33.0 6.400 4.070 -36.3 -30.000 46.000 -80.0 -30.000 13.000 -83.0 0.330 7.000 16.0 -0.230 -3.000 -39.0 4.030 20.000 -27.0 2.310 3.000 -41.0 0.55 0.71
alignment source: OPTM
-----EEEEE--- HHHHHH----EEEEEE--- -----EEEEE---E-- EEEEEEE--- --HH
Query: 1 MERPKLGLIVREP--YASLIVDGRKVWEIRRRKT-RHRGPLGIVSGGRLIG--QADLVGVEGP-------------FSVE 62
Sbjct: 1 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVD 80
----EEEEE---HHHHHHHHHH----EEEEEEEE----EEEEEEE--------EEEEEEE--------------EEEE--
HHHHHHHHH--HHHHHHHHH-----EEEEE----------EEE---- EEEEEE---
Query: 63 ELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPG-RVMFVDLSE 118
Sbjct: 81 ---------NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEGN 128
-HHHHHHHHHH---EEEEEEEE------EEEEEE-----EEEEEE---
118 residues (97.52%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 28.16% helical, 0.00% extended, 71.84% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [All alpha proteins]/[Cytochrome c]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1C2N a.3.1.1 5.4.4.4 NONE 0.762 0 1 66.94% 17.78% OPTM -28.258 -114.170 -12.050 2.900 1.840 71.000 -38.5 2.540 23.000 -81.0 2.140 4.860 -4.0 -0.400 1.490 -13.6 2.840 11.270 -19.3 4.580 4.530 -30.0 -30.000 14.000 -48.0 -30.000 5.000 -57.0 3.680 78.000 -13.0 4.910 30.000 -62.0 2.190 16.000 -35.0 3.240 14.000 -53.0 0.42 0.24
alignment source: OPTM
----EEEEEE--------EEEEE---E--EEEEEEE----- HHHHHH HHHHH--HH HHHHHHH-----E
Query: 20 DGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFS--VEELLA----HQEKHLAEE-----AFLRAYAKDEPLY 88
Sbjct: 23 DGTEIVKGAKTGPNLYG-----VVGRTAGTYP----EFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDK--- 90
----------------- ---------- ----HHHHHHHH------HHHHHHH-----HHHHHHH----
EEEE----------EEE----
Query: 89 AWVLENAFRYEKPLHVPRRPG 109
Sbjct: 91 --------KAKTGMAFKLAKG 103
------------H
81 residues (66.94%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 21.50% helical, 31.78% extended, 46.73% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1R9C_A not_found 17.17.17.17 NONE 0.739 0 1 95.87% 10.17% OPTM -55.458 -89.150 -18.650 2.630 0.080 -15.500 -32.5 1.770 28.000 -95.5 0.820 -0.850 -5.7 0.920 1.840 -16.8 5.290 22.510 -30.5 6.570 5.670 -36.1 -30.000 34.000 -69.0 -30.000 12.000 -73.0 0.980 17.000 -1.0 2.160 20.000 -58.0 1.540 14.000 -5.0 2.000 8.000 -36.0 0.50 0.99
alignment source: OPTM
-----EEEEE-- -HHHHHH----EEEEEE----- ---EEEEE---E--EE EEEEE--- --HHHH
Query: 1 MERPKLGLIVRE-----PYASLIVDGRKVWEIRRRKTRH---------RGPLGIVSGGRLIGQA-DLVGVEGP-FSVEEL 64
Sbjct: 3 EGLSHMTFIVRDLERMTRILEGVFDAREVYASDTEQFSLSREKFFLIGDIWVAIMQGEKLAERSYNHIAFKIDDADFDRY 82
---EEEEEE--HHHHHHHHHHHH--EEEEE----------EEEEEE--EEEEEEE----------EEEEE-----HHHHH
HHHHHHH--HHHHHHHHH-----EEEEE----------EEE----EEEEEE---
Query: 65 LAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSE 118
Sbjct: 83 AERVGKLGL---------DMRP---------PRPGRSIYFYDDDNHMFELHTGT 118
HHHHHH--- ---- ----EEEEE-----EEEEE---H
116 residues (95.87%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 8.40% helical, 24.43% extended, 67.18% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a/b)]/[P-loop containing nucleoside triphosphate hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1NP6_A c.37.1.10 6.1.1.1 NONE 0.723 0 1 88.43% 12.15% OPTM -30.350 -50.340 -17.150 3.160 0.050 2.500 20.0 0.440 16.500 -79.0 1.460 11.100 30.2 -0.210 3.800 -18.0 0.910 1.530 18.7 9.630 12.360 -42.1 -30.000 13.000 -51.0 -30.000 14.000 -75.0 1.620 63.000 34.0 2.990 36.000 -78.0 1.730 6.000 27.0 0.820 -7.000 -31.0 0.17 0.60
alignment source: OPTM
----EEEEE---HHHHHH-- --EEEEEE---- ----EEEEE---E--EEEEEEE----
Query: 2 ERPKLGLIVREPYASLIVDG-------RKVWEIRRRKTR---------------HRGPLGIVSGGRLIGQADLVGVEGPF 59
Sbjct: 34 RGIRPGLIKHTHHELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGA 113
---EEEEE-----HHHH---EEEEE----EEEEE---------HHHHHHH-------EEEEE-------EEEEEE-----
-HHHHHHHHHHH--HHHHHHHHH-----EEEEE----------EEE---
Query: 60 SVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRP 108
Sbjct: 114 ------GHRPEELV---------IDRHVIAVASDVPLNLDV-ALLDIND 146
-------- ---EEEEEE--------E EEE---H
107 residues (88.43%) of query sequence aligned
--> hit 6 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 22.90% helical, 19.08% extended, 58.02% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Dihydrofolate reductases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
3DFR c.71.1.1 6.2.2.2 NONE 0.703 0 1 96.69% 15.38% OPTM -42.528 -114.890 -21.860 6.160 0.940 9.000 30.0 1.120 4.000 -74.5 -0.210 3.860 144.5 -0.200 3.340 -20.3 3.290 13.330 65.6 4.360 -0.920 -36.1 -30.000 11.000 -57.0 -30.000 3.000 -75.0 0.180 0.000 106.0 6.330 34.000 -75.0 0.820 5.000 17.0 2.560 1.000 -52.0 0.06 0.73
alignment source: OPTM
---EEEEE---HHHHHH- ---EEEEEE--------EEEEE---E--EEEEEEE-----HHHHHHHHHHH--H
Query: 3 RPKLGLIVREPYASLIVD--GRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAE------ 74
Sbjct: 35 VGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAQ-----GA--------VVVHD---VAAVFAYAKQHLDQELVIAG 98
--EEEEEHHHHHH---------EEEEE---------- -E EE--H HHHHHHHHH-----EEE---
HHHHHHHH-- ---EEEEE---------- EEE--- -EEEEEE----
Query: 75 -EAFLRAYAKD-EPLYAWVLENAFRYEKPL--------------HVPRRP---GRVMFVDLSEV 119
Sbjct: 99 GAQIFTAFKDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA 162
HHHHHH------EEEEEEE-------EE--------EEEEEEEEE--------EEEEEEEE--A
117 residues (96.69%) of query sequence aligned
--> hit 7 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 12.07% helical, 25.00% extended, 62.93% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1V62_A not_found 17.17.17.17 NONE 0.664 0 1 85.12% 13.76% OPTM -69.521 -193.920 -21.040 7.010 0.740 11.000 -23.5 1.250 7.500 -70.5 -0.390 -1.000 3.9 -0.920 1.110 -15.3 1.750 -2.040 -20.5 4.400 3.750 -30.7 -30.000 4.000 -60.0 -30.000 10.000 -66.0 2.140 10.000 -13.0 5.860 29.000 -67.0 1.040 9.000 42.0 1.330 10.000 -32.0 0.37 0.68
alignment source: OPTM
-----EEEEE---HHHHHH----EEEEEE--------EEEEE--- E--EEEEEEE-----HHHHHHHHHHH
Query: 1 MERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGR---------LIGQADLVGVEGPFSVEELLAHQEKH 71
Sbjct: 13 ASGPLMVEIVKTP------GSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG-TSME--------H 77
---EEEEEE---- -----EEEEE------EEEEEE-----HHHHH--------EEEE--E E--- -
--HHHHHHHHH-----EEEEE----------EEE----
Query: 72 LAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPG 109
Sbjct: 78 CSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPS 115
-HHHHHHHHH----EEEEEE------------------
103 residues (85.12%) of query sequence aligned
--> hit 8 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 23.14% helical, 9.09% extended, 67.77% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1S1H_I not_found 17.17.17.17 NONE 0.650 0 1 87.60% 18.87% OPTM -59.751 -164.100 -11.940 2.240 1.440 39.000 -40.0 2.940 41.500 -97.5 1.380 9.650 5.3 -1.570 -1.330 -15.2 3.810 20.290 -17.6 4.820 7.830 -35.0 -30.000 8.000 -53.0 -30.000 5.000 -67.0 1.810 41.000 -2.0 3.040 25.000 -69.0 1.370 19.000 -1.0 0.540 -3.000 -41.0 0.40 0.52
alignment source: OPTM
--EEEEE---HHHHHH----EEEEEE--------EEEEE---E-- EEEEEEE---
Query: 4 PKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIG-------------------------QADLVGVEGP 58
Sbjct: 19 PSVQTFGKKK--------SATAVAHVKAGKGL----IKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGG 86
--EEE----- --EEEEEE------ EEE--EEHHHH----------HHHHH----------EEEEEE--
--HHHHHHHHHHH--HHHHHHHHH-- ---EEEEE----- ----- EEE----
Query: 59 FSVEELLAHQEKHLAEEAFLRAYAKD-------EPLYAWVLENAFR-YEKPL--HVPRRPG 109
Sbjct: 87 GHVSQVYAIRQAI---AKGLVAYHQKYVDEQSKNEL-----KKAFTSYDRTLLIADSRRPE 139
-HHHHHHHHHHHH HHHHHHH------------- --------------------
106 residues (87.60%) of query sequence aligned
--> hit 9 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.73% helical, 24.04% extended, 44.23% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Ferredoxin-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1REG_X d.58.27.1 15.3.1.1 NONE 0.615 0 1 96.69% 9.40% OPTM -83.794 -255.750 -15.210 3.970 -0.860 -8.000 -1.5 -0.150 -2.000 -63.0 -0.860 -4.930 1.5 0.600 1.320 -21.8 4.490 22.760 -32.2 7.130 5.730 -39.6 -30.000 22.000 -70.0 -30.000 13.000 -73.0 0.000 23.000 30.0 0.410 12.000 -37.0 0.860 14.000 -14.0 2.530 -1.000 -44.0 0.28 0.65
alignment source: OPTM
-EEEEE--- HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE-----HHHHHHH HHHH-
Query: 5 KLGLIVREP----YASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAH--------QEKHL 72
Sbjct: 1 MIEITLKKPEDFLKVKETLTR---MGIANNKDK-----VLYQSCHILQKKGLYYI---VHFKEMLRMDGRQVEMTEEDEV 69
-EEEE-----HHHHHHHHHH- EEEEE---- EEEE-EEEEEE--EEEE EEHHHHHHH--------HHHHH
-HHHHHHHHH-----EEEEE---------- EEE---- EEEEEE------
Query: 73 AEEAFLRAYAKDEPLYAWVLENAFRYEKPL----HVPRRPG--RVMFVDLSEVRW 121
Sbjct: 70 RRDSIAWLLEDWGLI--EIVPGQRTFMKDLTNNFRVISFKQKHEWKLVPKYTIGN 122
HHHHHHHHHHH---- EE---------------EE---------EEEE------
117 residues (96.69%) of query sequence aligned
--> hit 10 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 9.66% helical, 2.07% extended, 88.28% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1S1I_M not_found 17.17.17.17 NONE 0.590 0 1 90.91% 16.22% OPTM -35.538 -42.970 -10.280 1.430 1.480 40.000 -36.5 0.960 18.000 -92.0 0.040 4.380 29.3 -1.680 -0.990 -10.4 2.350 11.750 -1.7 2.630 0.110 -33.1 -30.000 9.000 -55.0 -30.000 6.000 -71.0 2.330 51.000 -11.0 2.010 29.000 -70.0 1.180 0.000 -8.0 1.780 5.000 -49.0 0.31 0.18
alignment source: OPTM
---HHHHHH----EEEEEE--------EEEEE--- E--EEEEEEE-----HHHHHHHHHHH--HHHHHHHHH
Query: 11 REPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGR--------LIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYA 82
Sbjct: 19 ASVVAKQLLNGQKIVVVRAEELNISG-----EFFRNKLKYHDFLRKATAFNKTRGPFHF----------RAPSRIFYKAL 83
-----HHHH-----EEEE-------- ---------------------------- -HHHHHHHHHH
-- ---EEEEE----------EEE----EEEEEE------
Query: 83 KD-------------EPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVRW 121
Sbjct: 84 RGMVSHKTARGKAALERLKVFEGIPP-PYDKKKRVVVPQ------ALRVLRL 128
------------------EEE----- ------------ -------
110 residues (90.91%) of query sequence aligned
--> hit 11 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 13.33% helical, 35.24% extended, 51.43% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1VKB_A not_found 17.17.17.17 NONE 0.583 0 1 98.35% 14.29% OPTM -71.027 -195.220 -17.770 2.930 1.360 3.000 -7.5 0.210 5.500 -62.5 -1.040 -4.850 55.2 -0.800 -0.480 -16.4 1.380 5.960 15.4 3.210 0.260 -30.9 -30.000 7.000 -54.0 -30.000 -1.000 -65.0 1.860 20.000 24.0 0.110 9.000 -41.0 4.390 40.000 -38.0 2.670 14.000 -59.0 0.33 0.76
alignment source: OPTM
---EEEEE-- -HHHHHH- ---EEEEEE--------EEEEE--- E--EEEEEEE-----
Query: 3 RPKLGLIVRE------PYASLIVD---GRKVWEIRRRKTRHRGPLGIVSGGR-------------LIGQADLVGVEGPFS 60
Sbjct: 3 HHMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVE---SFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVD---- 75
---EEEEE-----------HHHH------EEEEEEEEE-- ---EEEE----EEEEE---------EEEEEEE-
HHHHHHHHHHH--HHHHHHHHH-----EEEEE----------EEE-- -- EEEEEE---- --
Query: 61 VEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRR-PG----RVMFVDLSEV-RW 121
Sbjct: 76 -EQMLRFLDDFE-----------DCP------SMYQRTALQVQVLEWEPGDSVQCFVYTTATYAPEW 124
HHHHHHHHHH- --- ---EEEEEEEEEEEE----EEEEEEEEE-------
119 residues (98.35%) of query sequence aligned
--> hit 12 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 18.05% helical, 27.07% extended, 54.89% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1NKI_A not_found 17.17.17.17 NONE 0.576 0 1 95.04% 12.50% OPTM -17.269 -139.860 -17.550 0.560 -0.330 7.500 -10.5 -0.250 11.500 -65.0 2.360 10.780 -2.5 0.440 5.180 -20.0 4.870 21.870 -22.1 5.340 2.830 -33.2 -30.000 1.000 -58.0 -30.000 6.000 -70.0 1.070 -19.000 7.0 1.840 17.000 -58.0 2.180 17.000 -8.0 0.900 6.000 -34.0 0.11 0.84
alignment source: OPTM
-----EEEEE--- HHHHHH- ---EEEEEE--------EEEEE---E--EEEEEEE--- --HH
Query: 1 MERPKLGLIVREP--YASLIVD-GRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGP---------------FSVE 62
Sbjct: 3 TGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQ------GAYLELGSL----WLCLSREPQYGGPAADYTHYAFGIAAA 72
----EEEEE--HHHHHHHHHH----EEEEEE--E EEEEE--EE EEEEE-------------EEEE--HHH
HHHHHHHHH--HHHHHHHHH-----EEEEE----------EEE----EEEEEE-----
Query: 63 ELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVR 120
Sbjct: 73 DFARFAAQ-------LRAHGVR------EWKQNRSEGDSFYFLDPDGHRLEAHVGDLR 117
HHHHHHHH HH----E EE-------EEEEE-----EEEEE---HHH
115 residues (95.04%) of query sequence aligned
--> hit 13 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 27.19% helical, 32.46% extended, 40.35% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Restriction endonuclease-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1GEF_A c.52.1.18 6.1.1.1 NONE 0.574 0 1 78.51% 10.42% OPTM -36.595 -97.120 -16.700 2.590 0.810 35.000 -44.0 -0.800 11.500 -59.5 0.710 0.240 -3.0 -0.970 1.770 -16.2 4.390 15.160 -28.1 5.410 2.230 -33.2 -30.000 10.000 -61.0 -30.000 0.000 -66.0 1.890 18.000 -28.0 2.670 19.000 -65.0 1.610 -15.000 -20.0 0.370 -14.000 -37.0 -0.09 0.86
alignment source: OPTM
HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE---- -HHHHHHHHHHH--HHHHHHHHH-----E
Query: 14 YASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPF-----SVEELLAHQEKHLAEEAFLRAYAKDEPLY 88
Sbjct: 12 LIKLLEKHG--FAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGG-----------IPVL 78
HHHHHH--- EEEE--------EEEE----EEEEEEEEE----EEE-HHHHHHHHHHHHHH--E EEEE
EEEE-- --------EEE----
Query: 89 AWVLEN-------AFRYEKPLHVPRRPG 109
Sbjct: 79 AVKFLNVGWRFIEVSPKIEKFVFTPSSG 106
EEE---EEEEEE-------EEE------
95 residues (78.51%) of query sequence aligned
--> hit 14 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 16.55% helical, 9.66% extended, 73.79% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[N-acetylmuramoyl-L-alanine amidase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1LBA d.118.1.1 15.1.1.1 NONE 0.555 0 1 62.81% 9.41% OPTM -35.036 -52.360 -14.920 0.010 0.760 -15.500 7.5 -0.760 -19.500 -51.5 0.110 -0.270 43.8 1.160 -0.340 -25.4 -0.570 0.530 17.9 4.660 -2.800 -37.0 -30.000 25.000 -58.0 -30.000 5.000 -64.0 2.330 39.000 29.0 -0.910 0.000 -30.0 1.540 2.000 -10.0 4.760 16.000 -63.0 0.24 0.47
alignment source: OPTM
--------EEEEE---E--EEEEEEE-----HHHHHHHHHHH--HHHHHHHHH-----EEEEE--------- -EEE-
Query: 30 RKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKP---LHVPR 106
Sbjct: 1 AKQRESTDAIFVHCSATKP-------SQNVGVREIRQWHKEQG----------WLDVGYHFIIKRDGTVEAGRDEMAVGS 63
--------EEEEEE----- -----HHHHHHHHHH-- -------EEE-----EEE---------
- --EEEEE
Query: 107 R-----PGRVMFV 114
Sbjct: 64 HAKGYNHNSIGVC 76
--------EEEEE
76 residues (62.81%) of query sequence aligned
--> hit 15 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 17.12% helical, 37.84% extended, 45.05% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Pyruvoyl-dependent histidine and arginine decarboxylases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1N13_B d.155.1.2 15.1.1.1 NONE 0.545 0 1 76.86% 6.06% OPTM -83.011 -130.310 -16.230 0.580 1.500 22.000 -33.0 -0.540 4.500 -54.5 1.340 2.570 3.0 -0.730 -4.100 -28.8 4.640 20.260 -23.1 4.860 5.150 -37.7 -30.000 40.000 -69.0 -30.000 6.000 -70.0 1.160 24.000 4.0 -0.920 0.000 -31.0 0.290 -5.000 2.0 2.350 6.000 -44.0 -0.04 0.78
alignment source: OPTM
--EEEEEE--------EEEEE---E-- EEEEEEE-----HHHHHHHHHHH--HHHHHHHHH-----EEEEE-----
Query: 22 RKVWEIRRRKTRHRGPLGIVSGGRLIG----QADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFR 97
Sbjct: 73 VPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREM--AKIGFEMRGWELDRIESIAVE--- 147
-EEEEEEEE-----EEEEEEEEEEE-------EEEEEEE---HHHHHHHHHHHH HHHHHHH---EEEEEEEEEEE
-----EEE----EEEEEE-----
Query: 98 YEKPLHVPRRPGRVMFVDLSEVR 120
Sbjct: 148 -----HTVEKLGCAFAAAALWYK 165
E----EEEEEEEE----K
93 residues (76.86%) of query sequence aligned
--> hit 16 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 26.13% helical, 26.13% extended, 47.75% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Ferredoxin-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1LQ9_A d.58.4.3 15.3.1.1 NONE 0.533 0 1 87.60% 11.01% OPTM -28.053 -68.000 -14.690 1.230 0.560 18.500 -36.0 0.060 6.000 -70.0 1.700 5.110 -1.9 -0.610 0.320 -12.1 0.050 5.700 -8.2 7.570 3.130 -33.1 -30.000 19.000 -56.0 -30.000 13.000 -70.0 0.430 21.000 5.0 1.570 16.000 -50.0 1.620 31.000 -15.0 1.170 11.000 -44.0 0.66 0.80
alignment source: OPTM
-----EEEEE--- HHHHHH---- EEEEEE--------EEEEE---E--EEEEEEE-----H
Query: 1 MERPKLGLIVREP-----------YASLIVDGRK--------VWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSV 61
Sbjct: 4 VNDPRVGFVAVVTFPVDGPATQHKLVELATGGVQEWIREVPGFLSATYHASTD---------GTA--VVNYAQWES---- 68
------EEEEEEEE---HHHHHHHHHHH-------------EEEEEEEE---- -EE EEEEEE--H
HHHHHHHHHH-- HHHHHHHHH-----EEEEE----------EEE----
Query: 62 EELLAHQEKHLA---EEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPG 109
Sbjct: 69 ---EQAYRVNFGADPRSAELREALSSLP-------GLMGPPKAVFMTPRGA 109
HHHHHH----HHHHHHHHHHH---- -----EEEEE------
106 residues (87.60%) of query sequence aligned
--> hit 17 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.78% helical, 4.67% extended, 63.55% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [All alpha proteins]/[Cytochrome c]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1CXC a.3.1.1 5.4.4.4 NONE 0.532 0 1 77.69% 20.00% OPTM -42.922 -37.250 -13.190 3.770 4.440 128.500 -86.0 4.910 56.000 -105.0 2.550 13.890 -9.2 0.650 4.890 -18.4 2.800 10.790 -22.6 4.180 1.440 -29.4 -30.000 8.000 -43.0 -30.000 2.000 -52.0 3.500 69.000 -9.0 4.300 19.000 -53.0 -0.260 -12.000 -19.0 -0.410 -2.000 -42.0 0.40 0.26
alignment source: OPTM
-----EEEEE---HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE-- ---HHHHHHHHH
Query: 1 MERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEG-----------PFSVEELLAHQE 69
Sbjct: 13 NQCQTCHVIVDD-------SGT---TIAGRNAKTGPNLYGVVGRTAGTQADFKGY-GEGMKEAGAKGLAWDEEHFVQYVQ 81
-------EE--- --E EE---------------------------- HHHHHHHH------HHHHHHHHH-
HH--HHHHHHHHH-----EEEEE--------
Query: 70 KHLAEEAFLRAYAKDEPLYAWVLENAFRYEK 100
Sbjct: 82 DP---TKFLKEYTGDAKAKG---KMTFKLKK 106
HH HHHHHHH-------- -------H
94 residues (77.69%) of query sequence aligned
--> hit 18 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 32.61% helical, 5.43% extended, 61.96% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [All alpha proteins]/[Cytochrome c]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1COT a.3.1.1 5.4.4.4 NONE 0.523 0 1 79.34% 17.82% OPTM -59.957 -120.150 -13.670 2.800 1.800 71.500 -40.0 2.880 31.500 -91.0 2.680 14.170 -11.2 0.350 3.860 -18.4 2.960 11.010 -23.6 3.130 3.860 -29.8 -30.000 6.000 -44.0 -30.000 5.000 -54.0 2.310 55.000 7.0 4.060 24.000 -54.0 1.170 22.000 -24.0 0.550 7.000 -40.0 0.26 0.26
alignment source: OPTM
-----EEEEE---HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE-----HHHHHHHHHHH-
Query: 1 MERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHL-------- 72
Sbjct: 12 FNKCKACHMIQAP------DGTDIIKGGKTGPNLYG-----VVGRKIASE-----EGFKYGEGILEVAEKNPDLTWTEAD 75
--------EE--- --EEE------------ --------- -----HHHHHHHHH-------HHHH
-HHHHHHHHH-----EEEEE---------
Query: 73 ------AEEAFLRAYAKDEPLYAWVLENAFRYEKP 101
Sbjct: 76 LIEYVTDPKPWLVKMTDDKGAKT---KMTFKMGKN 107
HHHHH-HHHHHHHHH-------- --------H
96 residues (79.34%) of query sequence aligned
--> hit 19 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 0.00% helical, 46.61% extended, 53.39% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [All beta proteins]/[beta-Trefoil]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1IHK_A b.42.1.1 7.2.2.2 NONE 0.514 0 1 73.55% 13.45% OPTM -33.119 -69.490 -15.920 4.370 2.210 71.000 -18.5 2.270 36.500 -88.0 0.380 9.540 85.1 1.810 7.300 -32.4 2.150 10.200 36.3 1.870 -0.630 -31.5 -30.000 -1.000 -33.0 -30.000 4.000 -63.0 2.080 72.000 37.0 1.320 15.000 -48.0 2.560 27.000 -2.0 1.410 4.000 -50.0 0.21 0.27
alignment source: OPTM
---EEEEE---HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE-----HHHHHHHHHHH--HHHHHHHHH
Query: 3 RPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYA 82
Sbjct: 69 RTGFHLEIFP-------NGT--IQGTRKDHSRFGILEFIS--IAVGLVSIRGVDS------------------------- 112
---EEEE--- --E EEE---------EEEEEE E--EEEEEE----
-----EEEEE--- ------- EEE----EEEEEE------
Query: 83 KDEPLYAWVLENA--FRYEKPL-------HVPRRPGRVMFVDLSEVRW 121
Sbjct: 113 ---GLYLGMNEKGELYGSEKLTQECVFREQFEENWYNTYSSNLYKHVD 157
-EEEE-----EEEE--------EEEEEEE--EEEEEEEEEE----
89 residues (73.55%) of query sequence aligned
--> hit 20 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 19.63% helical, 28.04% extended, 52.34% loops/other (query: 21.49% 31.40% 47.11%)
SCOP classification: [Alpha and beta proteins (a+b)]/[HIT-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 |-------OPTM-------| |--------SEQ (global)------| |--------SEQ (local)------| |--------TRS (global)------| |--------TRS (local)------| |--------TSS (global)------| |--------TSS (local)------| |--------TSC (global)------| |--------TSC (local)------| |--------PSM (global)------| |--------PSM (local)------| |--------SRF (global)------| |--------SRF (local)------| sec. str.
(%) ident. src. all-atom all-atom energy r-energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy pos. comp.
1FIT d.13.1.1 15.1.1.1 NONE 0.507 0 1 80.99% 10.92% OPTM -26.921 -129.590 -19.720 1.150 0.110 8.000 -14.0 -0.080 9.500 -61.0 -0.530 2.560 4.7 0.340 1.170 -19.2 0.290 -2.390 -15.4 4.000 0.650 -33.1 -30.000 -6.000 -61.0 -30.000 1.000 -75.0 0.830 6.000 20.0 1.690 3.000 -43.0 1.540 8.000 -28.0 1.620 3.000 -48.0 0.41 0.90
alignment source: OPTM
---EEEEE---HHHHHH----EEEEEE--------EEEEE---E--EEEEEEE----- HHHHHHHHHHH--HHHH
Query: 3 RPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFS-----VEELLAHQEKHLAEEAF 77
Sbjct: 11 KPSVVFLKTE----------LSFALVNRKPVVPGHVLVCPLR---------PVERFHDLRPDEVADLFQTTQRV---GTV 68
---EEEE--- EEEEE---------EEEEE--- --------HHHHHHHHHHHHHHH HHH
HHHHH-----EEEEE----------EEE----EEEEEE------
Query: 78 LRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVRW 121
Sbjct: 69 VEKHFHGT----SLTFSQDGPEAGQTVKHVHVHVLPRKAGDASW 108
HHH----E EEE---------------EEEEEE--------
98 residues (80.99%) of query sequence aligned
DONE: Mon Oct 11 09:03:40 2004 EST