fragrep: Homology Search with Fragmented Nucleic Acid Sequence Patternsfragrep implements an efficient algorithm for detecting nucleotide pattern fragments in genomes that occur in a given order. For each pattern a tolerance can be specified separately.
fragrep is
available under the GNU GPL,
see Copyright.
fragrep uses
some postscript sources of
the WebLogo package, which
is subject to
the MIT
Open Source License.
aln2pattern, and a
sample fasta sequence for testing the resulting
pattern.fragrep2 publication